Please see the JBrowse view of Dmel\cpo for information on other features
To submit a correction to a gene model please use the Contact FlyBase form
AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Some regions with low pLDDT may be unstructured in isolation.
Tissue-specific extension of 3' UTRs observed during later stages (FBrf0218523, FBrf0219848); all variants may not be annotated
Gene model reviewed during 5.44
Gene model reviewed during 5.39
Gene model reviewed during 5.46
Annotated transcripts do not represent all supported alternative splices within 5' UTR.
Annotated transcripts do not represent all possible combinations of alternative exons and/or alternative promoters.
Gene model reviewed during 5.53
Multiphase exon postulated: exon reading frame differs in alternative transcripts.
Stop-codon suppression (UGA) postulated; FBrf0216885.
Unconventional translation start (CUG) postulated: conserved CUG (downstream of site proposed in GenBank accession Z14974, FBrf0056119).
7.8, 5.0, 4.5 (northern blot); 3.035 (longest cDNA)
Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\cpo using the Feature Mapper tool.
The testis specificity index was calculated from modENCODE tissue expression data by Vedelek et al., 2018 to indicate the degree of testis enrichment compared to other tissues. Scores range from -2.52 (underrepresented) to 5.2 (very high testis bias).
Comment: reported as dorsal/lateral sensory complexes
Comment: reference states "tracheal associated cell"
JBrowse - Visual display of RNA-Seq signals
View Dmel\cpo in JBrowse3-61
3-60.7
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see JBrowse for alignment of the cDNAs and ESTs to the gene model.
For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.
RNAi generated by PCR using primers directed to this gene causes a cell growth and viability phenotype when assayed in Kc167 and S2R+ cells.
RNAi screen using dsRNA made from templates generated with primers directed against this gene causes a cell growth and viability phenotype when assayed in Kc167 and S2R+ cells.
Candidate gene for quantitative trait (QTL) locus determining bristle number.
Identification: Enhancer trap expression pattern survey for loci expressed in the ring gland.
The cpo gene encodes a nuclear protein, and achaete, scute and daughterless gene function are required for proper expression of cpo in the PNS.
Mutant cpo individuals exhibit an abnormal and hypoactive behaviour.
Source for merge of: cpo E(sda)N
Source for merge of: cpo CG18434
Source for merge of: cpo BcDNA:AT31405
Source for merge of: cpo CG12349 CG18435
Source for merge of: cpo CG42457
Annotations CG31243 and CG42457 merged as CG43738 in release 5.44 of the genome annotation. Merge supported by stop codon read-through analysis (FBrf0216884).
Annotations CG12349, CG18434 and CG18435 merged as CG31243 in release 3 of the genome annotation.
Source for merge of cpo BcDNA:AT31405 was a shared cDNA ( date:030728 ).
