FB2024_04 , released June 25, 2024
Gene: Dmel\mof
Open Close
General Information
Symbol
Dmel\mof
Species
D. melanogaster
Name
males absent on the first
Annotation Symbol
CG3025
Feature Type
FlyBase ID
FBgn0014340
Gene Model Status
Stock Availability
Enzyme Name (EC)
histone acetyltransferase (2.3.1.48)
Gene Summary
males absent on the first (mof) encodes a MYST family histone acetyltransferase that acetylates the product of His4 at Lysine 16. It is part of the male-specific lethal complex that mediates dosage compensation by transcriptional upregulation of the male X chromosome. In addition, it is part of the non-specific lethal complex which regulates expression of housekeeping genes in males and females. [Date last reviewed: 2019-03-14] (FlyBase Gene Snapshot)
Also Known As

max, males absent on first, dMOF, males-absent on the X

Key Links
Genomic Location
Cytogenetic map
Sequence location
Recombination map
1-14
RefSeq locus
NC_004354 REGION:5873840..5876853
Sequence
Genomic Maps
Other Genome Views
The following external sites may use different assemblies or annotations than FlyBase.
Function
Gene Ontology (GO) Annotations (24 terms)
Molecular Function (6 terms)
Terms Based on Experimental Evidence (5 terms)
CV Term
Evidence
References
inferred from direct assay
inferred from direct assay
inferred from physical interaction with UniProtKB:A1Z8P9
inferred from physical interaction with FLYBASE:nsl1; FB:FBgn0262527
Terms Based on Predictions or Assertions (4 terms)
CV Term
Evidence
References
inferred from biological aspect of ancestor with PANTHER:PTN004172926
inferred from sequence or structural similarity with SGD:S000000148
inferred from sequence or structural similarity with SGD:S000004734
traceable author statement
inferred from electronic annotation with InterPro:IPR002717
traceable author statement
inferred from biological aspect of ancestor with PANTHER:PTN007449682
inferred from biological aspect of ancestor with PANTHER:PTN004172926
Biological Process (8 terms)
Terms Based on Experimental Evidence (6 terms)
CV Term
Evidence
References
inferred from mutant phenotype
inferred from direct assay
inferred from mutant phenotype
inferred from genetic interaction with FLYBASE:msl-2; FB:FBgn0005616
inferred from mutant phenotype
Terms Based on Predictions or Assertions (3 terms)
CV Term
Evidence
References
Cellular Component (10 terms)
Terms Based on Experimental Evidence (8 terms)
CV Term
Evidence
References
part_of MSL complex
inferred from direct assay
inferred from direct assay
part_of NSL complex
inferred from direct assay
inferred from direct assay
inferred from direct assay
located_in nucleus
inferred from direct assay
inferred from direct assay
inferred from direct assay
is_active_in X chromosome
inferred from direct assay
located_in X chromosome
inferred from direct assay
inferred from direct assay
Terms Based on Predictions or Assertions (7 terms)
CV Term
Evidence
References
part_of chromatin
inferred from biological aspect of ancestor with PANTHER:PTN004172926
part_of MSL complex
inferred from biological aspect of ancestor with PANTHER:PTN008308198
part_of NSL complex
inferred from biological aspect of ancestor with PANTHER:PTN008308198
is_active_in nucleus
inferred from biological aspect of ancestor with PANTHER:PTN004172926
located_in X chromosome
traceable author statement
Protein Family (UniProt)
Belongs to the MYST (SAS/MOZ) family. (O02193)
Catalytic Activity (EC/Rhea)
histone acetyltransferase activity
acetyl-CoA + L-lysyl-[protein] = CoA + H(+) + N(6)-acetyl-L-lysyl- [protein] (2.3.1.48)
RHEA 21992: histone H4K16 acetyltransferase activity
acetyl-CoA + L-lysyl-[protein] = CoA + H(+) + N(6)-acetyl-L-lysyl- [protein] (2.3.1.48)
Summaries
Gene Snapshot
males absent on the first (mof) encodes a MYST family histone acetyltransferase that acetylates the product of His4 at Lysine 16. It is part of the male-specific lethal complex that mediates dosage compensation by transcriptional upregulation of the male X chromosome. In addition, it is part of the non-specific lethal complex which regulates expression of housekeeping genes in males and females. [Date last reviewed: 2019-03-14]
Gene Group (FlyBase)
MALE SPECIFIC LETHAL COMPLEX -
The Male Specific Lethal (MSL) complex is a chromatin modifying complex composed of five protein subunits and two non-coding RNAs. MSL is involved in X chromosome dosage compensation in males. (Adapted from FBrf0228243).
HISTONE ACETYLTRANSFERASES -
Histone acetyltransferases catalyze the acetylation of conserved lysine residues on histone proteins by transferring an acetyl group from acetyl CoA to form ε-N-acetyl lysine. (Adapted from PMID:11395403).
Protein Function (UniProtKB)
Histone acetyltransferase that catalyzes the formation of the majority of histone H4 acetylation at 'Lys-16' (H4K16ac), an epigenetic mark that prevents chromatin compaction and constitutes the only acetylation mark intergenerationally transmitted (PubMed:10882077, PubMed:18510926, PubMed:20620953, PubMed:22421046, PubMed:32502394). Catalytic component of the male-specific lethal (MSL) complex, a multiprotein complex essential for elevating transcription of the single X chromosome in the male (X chromosome dosage compensation) (PubMed:10882077, PubMed:11014199, PubMed:16543150, PubMed:18510926, PubMed:34133927, PubMed:9155031). The MSL complex specifically associates with the single X chromosome in males and mediates formation of H4K16ac, promoting a two-fold activation of X chromosome (PubMed:11258702, PubMed:18510926, PubMed:20620953, PubMed:22421046). Dosage compensation ensures that males with a single X chromosome have the same amount of most X-linked gene products as females with two X chromosomes (PubMed:18510926, PubMed:9155031). In oocytes, mof is also part of a maternal MSL subcomplex that mediates H4K16ac deposition for intergenerational transmission: H4K16ac prepares the chromatin landscape for establishment of nucleosome accessibility and poises genes for future activation (PubMed:32502394). H4K16ac constitutes the only acetylation mark maintained from oocytes to fertilized embryos (PubMed:32502394). Mof also constitutes the catalytic component of the non-specific lethal (NLS) complex, which promotes expression of housekeeping genes on X chromosome and autosomes (PubMed:20620953, PubMed:20620954, PubMed:22723752). The NSL complex promotes strong expression of housekeeping genes compared to the two-fold expression mediated by the MSL complex on X chromosome, suggesting that the activation potential of mof is constrained in the context of dosage compensation (PubMed:20620953).
(UniProt, O02193)
Summary (Interactive Fly)

a MYST family histone acetyltransferase that acetylates His4 at Lysine 16. Mof is part of the male-specific lethal complex that mediates dosage compensation by transcriptional upregulation of the male X chromosome - part of the non-specific lethal complex which regulates expression of housekeeping genes in males and females - regulates DIAP1 and induces apoptosis in a JNK dependent pathway

Gene Model and Products
Number of Transcripts
1
Number of Unique Polypeptides
1

Please see the JBrowse view of Dmel\mof for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)
Isoform displayed:
Pfam protein domains
InterPro name
classification
start
end
Protein Domains (via SMART)
Isoform displayed:
SMART protein domains
InterPro name
classification
start
end
Structure
Protein 3D structure   (Predicted by AlphaFold)   (AlphaFold entry O02193)

If you don't see a structure in the viewer, refresh your browser.
Model Confidence:
  • Very high (pLDDT > 90)
  • Confident (90 > pLDDT > 70)
  • Low (70 > pLDDT > 50)
  • Very low (pLDDT < 50)

AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Some regions with low pLDDT may be unstructured in isolation.

Experimentally Determined Structures
Crossreferences
PDB - An information portal to biological macromolecular structures
Comments on Gene Model

Gene model reviewed during 5.52

Sequence Ontology: Class of Gene
Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Assoc. CDS (aa)
FBtr0070829
3014
827
Additional Transcript Data and Comments
Reported size (kB)

3.2 (northern blot)

Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
UniProt
RefSeq ID
GenBank
FBpp0070794
92.7
827
4.42
Polypeptides with Identical Sequences

There is only one protein coding transcript and one polypeptide associated with this gene

Additional Polypeptide Data and Comments
Reported size (kDa)
Comments
External Data
Post Translational Modification

Autoacetylation at Lys-638 is required for binding histone H4 with high affinity and for proper function.

Ubiquitinated by msl-2.

(UniProt, O02193)
Subunit Structure (UniProtKB)

Component of the male-specific lethal (MSL) histone acetyltransferase complex, composed of mof, mle, msl-1, msl-2 and msl-3 proteins, as well as roX1 and roX2 non-coding RNAs (PubMed:10679323, PubMed:11014199, PubMed:16543150, PubMed:18510926, PubMed:20620953, PubMed:20620954, PubMed:22421046). Component of a maternal MSL subcomplex composed of mof, msl-1 and msl-3 (PubMed:32502394). Component of the non-specific lethal (NLS) histone acetyltransferase complex at least composed of mof, nls1, dgt1/NSL2, Rcd1/NSL3, Rcd5/MCRS2, MBD-R2 and wds (PubMed:16543150, PubMed:20620953, PubMed:20620954, PubMed:22723752). In males, interacts with nucleoporin Mtor (PubMed:34133927).

(UniProt, O02193)
Domain

The tudor-knot domain (also named chromobarrel domain) mediates association with roX1 and roX2 non-coding RNAs, promoting recruitment to the male X chromosome (PubMed:11014199). It also potentiates the histone acetyltransferase activity after chromatin binding (PubMed:22421046).

(UniProt, O02193)
Linkouts
Sequences Consistent with the Gene Model
Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\mof using the Feature Mapper tool.

External Data
Crossreferences
Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.
Linkouts
Expression Data
Testis-specificity index

The testis specificity index was calculated from modENCODE tissue expression data by Vedelek et al., 2018 to indicate the degree of testis enrichment compared to other tissues. Scores range from -2.52 (underrepresented) to 5.2 (very high testis bias).

0.21

Transcript Expression
in situ
Stage
Tissue/Position (including subcellular localization)
Reference
organism

Comment: maternally deposited

northern blot
Stage
Tissue/Position (including subcellular localization)
Reference
Additional Descriptive Data

mof transcript is found in larvae and adults of both sexes.

Marker for
 
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
 
Subcellular Localization
CV Term
Evidence
References
part_of MSL complex
inferred from direct assay
inferred from direct assay
part_of NSL complex
inferred from direct assay
inferred from direct assay
inferred from direct assay
located_in nucleus
inferred from direct assay
inferred from direct assay
inferred from direct assay
is_active_in X chromosome
inferred from direct assay
located_in X chromosome
inferred from direct assay
inferred from direct assay
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools

JBrowse - Visual display of RNA-Seq signals

View Dmel\mof in JBrowse
RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region
Reference
See Gelbart and Emmert, 2013 for analysis details and data files for all genes.
Developmental Proteome: Life Cycle
Developmental Proteome: Embryogenesis
External Data and Images
Linkouts
BDGP expression data - Patterns of gene expression in Drosophila embryogenesis
DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species
EMBL-EBI Single Cell Expression Atlas - Single cell expression across species
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data
Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns
Flygut - An atlas of the Drosophila adult midgut
Images
Alleles, Insertions, Transgenic Constructs, and Aberrations
Classical and Insertion Alleles ( 9 )
For All Classical and Insertion Alleles Show
 
Other relevant insertions
Transgenic Constructs ( 53 )
For All Alleles Carried on Transgenic Constructs Show
Transgenic constructs containing/affecting coding region of mof
Transgenic constructs containing regulatory region of mof
Aberrations (Deficiencies and Duplications) ( 1 )
Variants
Variant Molecular Consequences
Alleles Representing Disease-Implicated Variants
Phenotypes
For more details about a specific phenotype click on the relevant allele symbol.
Lethality
Allele
Sterility
Allele
Other Phenotypes
Allele
Phenotype manifest in
Allele
Orthologs
Human Orthologs (via DIOPT v9.1)
Species\Gene Symbol
Score
Best Score
Best Reverse Score
Alignment
Complementation?
Transgene?
Homo sapiens (Human) (6)
13 of 14
Yes
Yes
5 of 14
No
No
3 of 14
No
No
3 of 14
No
No
3 of 14
No
No
1 of 14
No
No
Model Organism Orthologs (via DIOPT v9.1)
Species\Gene Symbol
Score
Best Score
Best Reverse Score
Alignment
Complementation?
Transgene?
Rattus norvegicus (Norway rat) (5)
13 of 14
Yes
Yes
4 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
Mus musculus (laboratory mouse) (6)
12 of 14
Yes
Yes
5 of 14
No
No
3 of 14
No
No
3 of 14
No
No
3 of 14
No
No
1 of 14
No
No
Xenopus tropicalis (Western clawed frog) (11)
7 of 13
Yes
Yes
6 of 13
No
No
5 of 13
No
No
2 of 13
No
No
2 of 13
No
No
2 of 13
No
Yes
1 of 13
No
Yes
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
Danio rerio (Zebrafish) (8)
13 of 14
Yes
Yes
5 of 14
No
No
4 of 14
No
No
3 of 14
No
No
3 of 14
No
No
1 of 14
No
Yes
1 of 14
No
No
1 of 14
No
No
Caenorhabditis elegans (Nematode, roundworm) (5)
12 of 14
Yes
Yes
5 of 14
No
No
4 of 14
No
No
2 of 14
No
No
1 of 14
No
Yes
Anopheles gambiae (African malaria mosquito) (7)
11 of 12
Yes
Yes
Arabidopsis thaliana (thale-cress) (2)
10 of 13
Yes
Yes
10 of 13
Yes
Yes
Saccharomyces cerevisiae (Brewer's yeast) (3)
4 of 13
Yes
No
3 of 13
No
Yes
3 of 13
No
No
Schizosaccharomyces pombe (Fission yeast) (2)
4 of 12
Yes
No
3 of 12
No
No
Escherichia coli (enterobacterium) (0)
Other Organism Orthologs (via OrthoDB)
Data provided directly from OrthoDB:mof. Refer to their site for version information.
Paralogs
Paralogs (via DIOPT v9.1)
Drosophila melanogaster (Fruit fly) (7)
7 of 13
6 of 13
6 of 13
5 of 13
1 of 13
1 of 13
1 of 13
Human Disease Associations
FlyBase Human Disease Model Reports
    Disease Ontology (DO) Annotations
    Models Based on Experimental Evidence ( 0 )
    Allele
    Disease
    Evidence
    References
    Potential Models Based on Orthology ( 0 )
    Human Ortholog
    Disease
    Evidence
    References
    Modifiers Based on Experimental Evidence ( 1 )
    Allele
    Disease
    Interaction
    References
    Disease Associations of Human Orthologs (via DIOPT v9.1 and OMIM)
    Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.
    Functional Complementation Data
    Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.
    Interactions
    Summary of Physical Interactions
    esyN Network Diagram
    Show neighbor-neighbor interactions:
    Show/hide secondary interactors 
    (data from AllianceMine provided by esyN)
    Select Layout:
    Legend:
    Protein
    RNA
    Selected Interactor(s)
    Other Interaction Browsers

    Please see the Physical Interaction reports below for full details
    protein-protein
    Physical Interaction
    Assay
    References
    RNA-protein
    Physical Interaction
    Assay
    References
    Summary of Genetic Interactions
    esyN Network Diagram
    Show/hide secondary interactors 
    (data from AllianceMine provided by esyN)
    esyN Network Key:
    Suppression
    Enhancement
    Other Interaction Browsers

    Please look at the allele data for full details of the genetic interactions
    Starting gene(s)
    Interaction type
    Interacting gene(s)
    Reference
    Starting gene(s)
    Interaction type
    Interacting gene(s)
    Reference
    External Data
    Subunit Structure (UniProtKB)
    Component of the male-specific lethal (MSL) histone acetyltransferase complex, composed of mof, mle, msl-1, msl-2 and msl-3 proteins, as well as roX1 and roX2 non-coding RNAs (PubMed:10679323, PubMed:11014199, PubMed:16543150, PubMed:18510926, PubMed:20620953, PubMed:20620954, PubMed:22421046). Component of a maternal MSL subcomplex composed of mof, msl-1 and msl-3 (PubMed:32502394). Component of the non-specific lethal (NLS) histone acetyltransferase complex at least composed of mof, nls1, dgt1/NSL2, Rcd1/NSL3, Rcd5/MCRS2, MBD-R2 and wds (PubMed:16543150, PubMed:20620953, PubMed:20620954, PubMed:22723752). In males, interacts with nucleoporin Mtor (PubMed:34133927).
    (UniProt, O02193 )
    Linkouts
    DroID - A comprehensive database of gene and protein interactions.
    MIST (protein-protein) - An integrated Molecular Interaction Database
    Pathways
    Signaling Pathways (FlyBase)
    Metabolic Pathways
    External Data
    Linkouts
    Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.
    Genomic Location and Detailed Mapping Data
    Chromosome (arm)
    X
    Recombination map
    1-14
    Cytogenetic map
    Sequence location
    FlyBase Computed Cytological Location
    Cytogenetic map
    Evidence for location
    5C5-5C5
    Limits computationally determined from genome sequence between P{EP}CG15770EP390 and P{EP}Act5CEP1604&P{EP}EP444
    Experimentally Determined Cytological Location
    Cytogenetic map
    Notes
    References
    5C3-5C3
    (determined by in situ hybridisation)
    Experimentally Determined Recombination Data
    Left of (cM)
    Right of (cM)
    Notes
    Stocks and Reagents
    Stocks (11)
    Genomic Clones (18)
     

    Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

    cDNA Clones (40)
     

    Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see JBrowse for alignment of the cDNAs and ESTs to the gene model.

    cDNA clones, fully sequenced
    BDGP DGC clones
    Other clones
      Drosophila Genomics Resource Center cDNA clones

      For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

      cDNA Clones, End Sequenced (ESTs)
      RNAi and Array Information
      Linkouts
      DRSC - Results frm RNAi screens
      Antibody Information
      Laboratory Generated Antibodies
      Commercially Available Antibodies
       
      Cell Line Information
      Publicly Available Cell Lines
       
        Other Stable Cell Lines
         
          Other Comments

          The MSL complex does not mediate dosage compensation directly, but rather its activity overrides the high level of histone acetylation and counteracts the potential overexpression of X-linked genes to achieve the proper twofold up-regulation in males.

          mof protein distributes dynamically between two complexes, the dosage compensation complex and a complex containing MBD-R2 protein, a global facilitator of transcription.

          Gene expression is increased in response to the presence of two copies of Scer\GAL4hs.PB.

          Gene products of the male specific lethal (msl) group of genes including msl-1, msl-2, msl-3, mle, and mof are associated with all female chromosomes at a low level but are sequestered to the X chromosome in males. There is evidence for the presence of nucleation sites for association of msl proteins with the X chromosome rather than individual gene binding sites. mof is still capable of associating with the chromosome in msl mutant individuals. It appears to be able to dissociate from other members of the MSL complex under these circumstances and act independently.

          Gene products of the male specific lethal (msl) group of genes preferentially associate with the male X chromosome and may have a role in dosage compensation. This may be achieved by regulating an inverse dosage effect, which would be maintained on the male X and nullified on the autosomes.

          mof colocalises with the MSL complex on the X chromosome: a sequence of binding events results in the formation of the MSL complex on the X chromosome in males and in the targeting of mof to its presumed site of action.

          mof encodes a putative histone acetyl transferase (HAT) that plays a direct role in the specific histone acetylation associated with dosage compensation, the male-specific hypertranscription of X-linked genes. mof function in dosage compensation is supported by the effect of the mutation on the binding of other dosage compensation regulatory factors to the X chromosome and its effect on the normal consequences that this binding has on nucleosomal structure.

          Male lethal locus that exhibits a strong maternal effect and is responsible for dosage compensation in males.

          Relationship to Other Genes
          Source for database merge of
          Additional comments

          The mof gene may have been derived from the chm gene by retroposition.

          Nomenclature History
          Source for database identify of

          Source for identity of: mof CG3025

          Nomenclature comments
          Etymology
          Synonyms and Secondary IDs (14)
          Reported As
          Symbol Synonym
          MOF
          (Richards et al., 2022, Aleman et al., 2021, Dai et al., 2021, Makki and Meller, 2021, Wolfe et al., 2021, Zhang et al., 2021, Samata et al., 2020, Bhardwaj et al., 2019, Lam et al., 2019, Leatham-Jensen et al., 2019, Lv et al., 2019, Mujoo et al., 2017, Cugusi et al., 2016, Zee et al., 2016, Keller and Akhtar, 2015, Lindehell et al., 2015, Lucchesi and Kuroda, 2015, Meunier et al., 2015, Saberi et al., 2015, Vensko and Stone, 2015, Alekseyenko et al., 2014, Chen et al., 2014, Chery and Larschan, 2014, Comoglio and Paro, 2014, Dias et al., 2014, Ferrari et al., 2014, Figueiredo et al., 2014, Ho et al., 2014, Lubelsky et al., 2014, McElroy et al., 2014, Zhimulev et al., 2014, Ilik et al., 2013, Philip and Stenberg, 2013, Conrad et al., 2012, Dunlap et al., 2012, Feller et al., 2012, Lam et al., 2012, Lv et al., 2012, Maenner et al., 2012, Philip et al., 2012, Villa et al., 2012, Georgiev et al., 2011, Morra et al., 2011, Regnard et al., 2011, Stenberg and Larsson, 2011, Straub and Becker, 2011, Andersen et al., 2010, Deng and Disteche, 2010, Raja et al., 2010, Schiemann et al., 2010, Vaquerizas et al., 2010, Grimaud and Becker, 2009, Patalano et al., 2009, Birchler et al., 2008, Kind et al., 2008, Straub et al., 2008, Sural et al., 2008, Mendjan and Akhtar, 2007, Morra et al., 2007, Park et al., 2007, Roy et al., 2007, Straub and Becker, 2007, Birchler et al., 2006, Buscaino et al., 2006, Dahlsveen et al., 2006, Deng and Meller, 2006, Deng and Meller, 2006, Furuhashi et al., 2006, Gilfillan et al., 2006, Park et al., 2006, de la Cruz et al., 2005, Li et al., 2005, Morales et al., 2005, Nielsen et al., 2005, Nusinow and Panning, 2005, Straub et al., 2005, Kelley, 2004, Kellum, 2003, Bouazoune et al., 2002, Corona et al., 2002, Akhtar and Becker, 2001, Akhtar and Becker, 2001, Rattner and Meller, 2001, Kelley and Kuroda, 2000, Scott et al., 2000, Smith et al., 2000, Kouzarides, 1999)
          mof
          (Lee et al., 2024, Godneeva et al., 2023, Ding et al., 2022, Ota et al., 2021, Witt et al., 2021, Haberle et al., 2019, Luzhin et al., 2019, Molnar et al., 2019, Prayitno et al., 2019, Gene Disruption Project members, 2018-, Rennie et al., 2018, Valsecchi et al., 2018, Janssens et al., 2017, Schunter et al., 2017, Transgenic RNAi Project members, 2017-, Birchler, 2016, Chlamydas et al., 2016, Hirano et al., 2016, Ulianov et al., 2016, Koya and Meller, 2015, Lucchesi and Kuroda, 2015, Sun et al., 2015, dos Santos, 2014, Figueiredo et al., 2014, Mengoli et al., 2014, Czech et al., 2013, Philip and Stenberg, 2013, Pushpavalli et al., 2013, Sun et al., 2013, Vaque et al., 2013, Wang et al., 2013, Bateman et al., 2012, Bhadra et al., 2012, Bodai et al., 2012, Conrad et al., 2012, Conrad et al., 2012, Hainaut et al., 2012, Japanese National Institute of Genetics, 2012.5.21, Larschan et al., 2012, Birchler et al., 2011, Friedman et al., 2011, Stenberg and Larsson, 2011, Gan et al., 2010, Gladstein et al., 2010, Prabhakaran and Kelley, 2010, Prestel et al., 2010, Schiemann et al., 2010, Yu et al., 2010, Zhang et al., 2010, Gelbart et al., 2009, Menon and Meller, 2009, Sun and Birchler, 2009, Bell et al., 2008, Kulkarni-Shukla et al., 2008, Li et al., 2008, Liu and Lehmann, 2008, Matyunina et al., 2008, Morra et al., 2008, Spierer et al., 2008, Kind and Akhtar, 2007, Levine et al., 2007, Rodriguez et al., 2007, Worringer and Panning, 2007, Yokoyama et al., 2007, Furuhashi et al., 2006, Mendjan et al., 2006, Pal Bhadra et al., 2006, Schubeler, 2006, Ray and Fox, 2005, Zhimulev et al., 2003, Gim et al., 2001)
          Secondary FlyBase IDs
            Datasets (2)
            Study focus (2)
            Experimental Role
            Project
            Project Type
            Title
            • bait_protein
            Genome-wide localization of chromosomal proteins in cell lines by ChIP-chip and ChIP-Seq.
            • bait_protein
            Genome-wide localization of chromosomal proteins in fly tissues by ChIP-chip and ChIP-Seq.
            Study result (0)
            Result
            Result Type
            Title
            External Crossreferences and Linkouts ( 42 )
            Sequence Crossreferences
            NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.
            GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.
            GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.
            RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
            UniProt/GCRP - The gene-centric reference proteome (GCRP) provides a 1:1 mapping between genes and UniProt accessions in which a single 'canonical' isoform represents the product(s) of each protein-coding gene.
            UniProt/Swiss-Prot - Manually annotated and reviewed records of protein sequence and functional information
            Other crossreferences
            AlphaFold DB - AlphaFold provides open access to protein structure predictions for the human proteome and other key proteins of interest, to accelerate scientific research.
            BDGP expression data - Patterns of gene expression in Drosophila embryogenesis
            DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species
            EMBL-EBI Single Cell Expression Atlas - Single cell expression across species
            FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data
            FlyMine - An integrated database for Drosophila genomics
            KEGG Genes - Molecular building blocks of life in the genomic space.
            MARRVEL_MODEL - MARRVEL (model organism gene)
            PDB - An information portal to biological macromolecular structures
            Linkouts
            Drosophila Genomics Resource Center - Drosophila Genomics Resource Center (DGRC) cDNA clones
            DroID - A comprehensive database of gene and protein interactions.
            DRSC - Results frm RNAi screens
            Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.
            FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
            FlyCyc Genes - Genes from a BioCyc PGDB for Dmel
            Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns
            Flygut - An atlas of the Drosophila adult midgut
            iBeetle-Base - RNAi phenotypes in the red flour beetle (Tribolium castaneum)
            Interactive Fly - A cyberspace guide to Drosophila development and metazoan evolution
            MIST (protein-protein) - An integrated Molecular Interaction Database
            Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.
            References (285)