Gene Group: CHROMATIN REMODELING COMPLEXES (ATP-DEPENDENT)

General Information

Name

CHROMATIN REMODELING COMPLEXES (ATP-DEPENDENT)

Species

D. melanogaster

Symbol

REMOD-C

FlyBase ID

FBgg0000284

Date last reviewed

2015-06-16

Number of members

Description

Chromatin remodeling complexes are multi-protein assemblies that contain an SNF2 subfamily ATPase subunit that is capable of mobilizing nucleosomes using ATP hydrolysis. Remodeling alters chromatin accessibility by changing nucleosome deposition, structure or spacing. (Adapted from PMID:26075616).

Notes on Group

Source Material

The CHROMATIN REMODELING COMPLEXES (ATP-DEPENDENT) Gene Group has been compiled using the following publication(s): Barish et al., 2020, Scacchetti et al., 2020, Zhang et al., 2016, Emelyanov et al., 2012, Alkhatib and Landry, 2011, Schuettengruber et al., 2011, Reddy et al., 2010, Clapier and Cairns, 2009, Chalkley et al., 2008, Hanai et al., 2008, Bouazoune and Brehm, 2006, Klymenko et al., 2006, Corona and Tamkun, 2004, Kusch et al., 2004, Mohrmann et al., 2004, Badenhorst et al., 2002, Eberharter et al., 2001, Ito et al., 1999, and Tsukiyama and Wu, 1995 .

Key Gene Ontology (GO) terms

Molecular Function

Biological Process

chromatin remodeling

Cellular Component

SWI/SNF superfamily-type complex

Related Gene Groups

Component group(s)

BRAHMA COMPLEXES

INO80 COMPLEX

ISWI COMPLEXES

NUCLEOSOME REMODELING DEACETYLASE COMPLEX

TIP60 COMPLEX

Protein Complex group(s)

CHROMATIN ASSEMBLY FACTOR 1

Other related group(s)

SNF2-LIKE CHROMATIN REMODELERS

Members (51)

For all members:

GO ribbon stack

	molecular function	biological process	cellular component

ACF COMPLEX

Gene Symbol

Gene Name

Also Known As

Source Material for Membership

Acf

ATP-dependent chromatin assembly factor large subunit

Acf1, CHRAC, dCHRAC, dACF

(Clapier and Cairns, 2009, Bouazoune and Brehm, 2006, Ito et al., 1999)

Iswi

Imitation SWI

NURF, CHRAC, ACF, dISWI, dNURF

(Clapier and Cairns, 2009, Bouazoune and Brehm, 2006, Ito et al., 1999)

BRAHMA ASSOCIATED PROTEINS COMPLEX

Gene Symbol

Gene Name

Also Known As

Source Material for Membership

Act5C

Actin 5C

actin, F-actin, BAP47, β-actin, 5C actin

(Barish et al., 2020, Chalkley et al., 2008, Mohrmann et al., 2004)

Act42A

Actin 42A

actin, F-actin, BAP47, C, Act42

(Chalkley et al., 2008, Mohrmann et al., 2004)

Bap55

Brahma associated protein 55kD

Arp4

(Barish et al., 2020, Chalkley et al., 2008, Mohrmann et al., 2004)

Bap60

Brahma associated protein 60kD

(Barish et al., 2020, Chalkley et al., 2008, Mohrmann et al., 2004)

Bap111

Brahma associated protein 111kD

dalao, BAF57

(Barish et al., 2020, Chalkley et al., 2008, Mohrmann et al., 2004)

Brd7-9

Bromodomain containing 7/9

BRD7

(Barish et al., 2020)

brm

brahma

l(3)72Aa, dBRM

(Barish et al., 2020, Chalkley et al., 2008, Mohrmann et al., 2004)

dd4

(Barish et al., 2020)

mor

moira

BAP155, Moi, brahma-associated protein 155

(Barish et al., 2020, Chalkley et al., 2008, Mohrmann et al., 2004)

osa

eld, eyelid, C819, l(3)00090

(Barish et al., 2020, Chalkley et al., 2008, Mohrmann et al., 2004)

Snr1

Snf5-related 1

BAP45

(Chalkley et al., 2008, Mohrmann et al., 2004)

CHROMATIN ACCESSIBILITY COMPLEX

Gene Symbol

Gene Name

Also Known As

Source Material for Membership

Acf

ATP-dependent chromatin assembly factor large subunit

Acf1, CHRAC, dCHRAC, dACF

(Clapier and Cairns, 2009, Bouazoune and Brehm, 2006, Eberharter et al., 2001)

Chrac-14

Chromatin accessibility complex 14kD protein

CHRAC14, PolE3, CHRAC, mary

(Clapier and Cairns, 2009, Bouazoune and Brehm, 2006, Eberharter et al., 2001)

Chrac-16

Chromatin accessibility complex 16kD protein

CHRAC16, joey, CHRAC

(Clapier and Cairns, 2009, Bouazoune and Brehm, 2006, Eberharter et al., 2001)

Iswi

Imitation SWI

NURF, CHRAC, ACF, dISWI, dNURF

(Clapier and Cairns, 2009, Bouazoune and Brehm, 2006, Eberharter et al., 2001)

INO80 COMPLEX

Gene Symbol

Gene Name

Also Known As

Source Material for Membership

Act5C

Actin 5C

actin, F-actin, BAP47, β-actin, 5C actin

(Clapier and Cairns, 2009, Klymenko et al., 2006)

Arp5

Actin-related protein 5

(Clapier and Cairns, 2009, Klymenko et al., 2006)

Arp8

Actin-related protein 8

(Clapier and Cairns, 2009, Klymenko et al., 2006)

Ino80

INO80 complex subunit

Tel, Telomere elongation, dIno80

(Clapier and Cairns, 2009, Klymenko et al., 2006)

pho

pleiohomeotic

l(4)29, YY1, l(4)102EFc, l(4)BU-2, Pleohomeotic

(Clapier and Cairns, 2009, Klymenko et al., 2006)

pont

pontin

dPontin, RUVBL1, Tip49/Pontin, Tip49

(Clapier and Cairns, 2009, Klymenko et al., 2006)

rept

reptin

l(3)06945, dReptin, psg10, Tip48, Tip48/Reptin

(Clapier and Cairns, 2009, Klymenko et al., 2006)

NON-CANONICAL BRAHMA ASSOCIATED PROTEINS COMPLEX

Gene Symbol

Gene Name

Also Known As

Source Material for Membership

Act5C

Actin 5C

actin, F-actin, BAP47, β-actin, 5C actin

(Barish et al., 2020)

Bap55

Brahma associated protein 55kD

Arp4

(Barish et al., 2020)

Bap60

Brahma associated protein 60kD

(Barish et al., 2020)

Bicra

BRD4 interacting chromatin remodeling complex associated protein

(Barish et al., 2020)

Brd7-9

Bromodomain containing 7/9

BRD7

(Barish et al., 2020)

brm

brahma

l(3)72Aa, dBRM

(Barish et al., 2020)

mor

moira

BAP155, Moi, brahma-associated protein 155

(Barish et al., 2020)

NORC COMPLEX

Gene Symbol

Gene Name

Also Known As

Source Material for Membership

Iswi

Imitation SWI

NURF, CHRAC, ACF, dISWI, dNURF

(Emelyanov et al., 2012)

tou

toutatis

gene VI, EP622

(Emelyanov et al., 2012)

NUCLEOSOME REMODELING DEACETYLASE COMPLEX

Gene Symbol

Gene Name

Also Known As

Source Material for Membership

Caf1-55

Chromatin assembly factor 1, p55 subunit

p55, Caf1, NURF, NURF55, NURF-55

(Zhang et al., 2016, Schuettengruber et al., 2011, Reddy et al., 2010, Clapier and Cairns, 2009)

CDK2AP1

CDK2-associated protein 1

(Zhang et al., 2016, Reddy et al., 2010)

HDAC1

Histone deacetylase 1

Rpd3, dHDAC1, dRPD3, HDAC, Su(var)326

(Zhang et al., 2016, Schuettengruber et al., 2011, Reddy et al., 2010, Clapier and Cairns, 2009)

MBD-like

Methyl-CpG binding domain protein-like

dMBD2/3, MBD2/3, MBD3, MBD2

(Zhang et al., 2016, Schuettengruber et al., 2011, Reddy et al., 2010, Clapier and Cairns, 2009)

MEP-1

(Reddy et al., 2010)

Mi-2

dMi-2, Pha, dMi2, l(3)S085401, PHD-containing ATPase

(Zhang et al., 2016, Schuettengruber et al., 2011, Reddy et al., 2010, Clapier and Cairns, 2009)

MTA1-like

Metastasis associated 1-like

MTA-like, dMTA1-like, MTA1, MTA, dMTA

(Zhang et al., 2016, Schuettengruber et al., 2011, Reddy et al., 2010, Clapier and Cairns, 2009)

simj

simjang

p66, l(3)01814, dp66

(Zhang et al., 2016, Schuettengruber et al., 2011, Reddy et al., 2010, Clapier and Cairns, 2009)

NUCLEOSOME REMODELING FACTOR

Gene Symbol

Gene Name

Also Known As

Source Material for Membership

Caf1-55

Chromatin assembly factor 1, p55 subunit

p55, Caf1, NURF, NURF55, NURF-55

(Alkhatib and Landry, 2011, Bouazoune and Brehm, 2006, Corona and Tamkun, 2004, Badenhorst et al., 2002, Tsukiyama and Wu, 1995)

E(bx)

Enhancer of bithorax

NURF301, NURF, dNURF, p301, Nurf-215

(Alkhatib and Landry, 2011, Bouazoune and Brehm, 2006, Corona and Tamkun, 2004, Badenhorst et al., 2002, Tsukiyama and Wu, 1995)

Iswi

Imitation SWI

NURF, CHRAC, ACF, dISWI, dNURF

(Alkhatib and Landry, 2011, Bouazoune and Brehm, 2006, Corona and Tamkun, 2004, Badenhorst et al., 2002, Tsukiyama and Wu, 1995)

Nurf-38

Nucleosome remodeling factor - 38kD

NURF, NURF38, p38, dNURF, l(2)k16102

(Alkhatib and Landry, 2011, Bouazoune and Brehm, 2006, Corona and Tamkun, 2004, Badenhorst et al., 2002, Tsukiyama and Wu, 1995)

POLYBROMO-CONTAINING BRAHMA ASSOCIATED PROTEINS COMPLEX

Gene Symbol

Gene Name

Also Known As

Source Material for Membership

Act5C

Actin 5C

actin, F-actin, BAP47, β-actin, 5C actin

(Barish et al., 2020, Chalkley et al., 2008, Bouazoune and Brehm, 2006, Mohrmann et al., 2004)

Act42A

Actin 42A

actin, F-actin, BAP47, C, Act42

(Chalkley et al., 2008, Bouazoune and Brehm, 2006, Mohrmann et al., 2004)

Bap55

Brahma associated protein 55kD

Arp4

(Barish et al., 2020, Chalkley et al., 2008, Bouazoune and Brehm, 2006, Mohrmann et al., 2004)

Bap60

Brahma associated protein 60kD

(Barish et al., 2020, Chalkley et al., 2008, Bouazoune and Brehm, 2006, Mohrmann et al., 2004)

Bap111

Brahma associated protein 111kD

dalao, BAF57

(Barish et al., 2020, Chalkley et al., 2008, Bouazoune and Brehm, 2006, Mohrmann et al., 2004)

Bap170

Brahma associated protein 170kD

BcDNA:GH12174

(Barish et al., 2020, Chalkley et al., 2008, Bouazoune and Brehm, 2006, Mohrmann et al., 2004)

Brd7-9

Bromodomain containing 7/9

BRD7

(Barish et al., 2020)

brm

brahma

l(3)72Aa, dBRM

(Barish et al., 2020, Chalkley et al., 2008, Bouazoune and Brehm, 2006, Mohrmann et al., 2004)

e(y)3

enhancer of yellow 3

SAYP, l(1)G0084, Supporter of Activation of Yellow Protein, l(1)G0266, l(1)G0381

(Barish et al., 2020, Chalkley et al., 2008)

mor

moira

BAP155, Moi, brahma-associated protein 155

(Barish et al., 2020, Chalkley et al., 2008, Bouazoune and Brehm, 2006, Mohrmann et al., 2004)

polybromo

PB, bap180, baf180

(Barish et al., 2020, Chalkley et al., 2008, Bouazoune and Brehm, 2006, Mohrmann et al., 2004)

Snr1

Snf5-related 1

BAP45

(Barish et al., 2020, Chalkley et al., 2008, Bouazoune and Brehm, 2006, Mohrmann et al., 2004)

REMODELING AND SPACING FACTOR COMPLEX

Gene Symbol

Gene Name

Also Known As

Source Material for Membership

CG8677

BEST:LD14959

(Hanai et al., 2008)

Iswi

Imitation SWI

NURF, CHRAC, ACF, dISWI, dNURF

(Hanai et al., 2008)

TIP60 COMPLEX

Gene Symbol

Gene Name

Also Known As

Source Material for Membership

Act87E

Actin 87E

actin, E