Abstract
An explanation for the origins of four classes of regularly occurring duplication and deficiency chromosomes is provided through examination of their molecular structures. The duplications and deficiencies occur as the reciprocal products of crossing-over, following two different patterns of asymmetrical synapsis between transposons positioned in and proximal to the white locus of Drosophila melanogaster. Three copies of the retrovirus-like transposon roo are involved in the exchanges. Evidence suggests that transposon-mediated asymmetrical exchange is a general phenomenon in eukaryotes, which adds significantly to the effects of transposons in the restructuring of eukaryotic genomes.
