FB2024_03 , released June 25, 2024
Allele: Dmel\swaVA11
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General Information
Symbol
Dmel\swaVA11
Species
D. melanogaster
Name
FlyBase ID
FBal0103533
Feature type
allele
Associated gene
Associated Insertion(s)
Carried in Construct
Also Known As
swwVA11
Key Links
Genomic Maps

Allele class
Mutagen
    Nature of the Allele
    Allele class
    Mutagen
    Progenitor genotype
    Cytology
    Description

    Amino acid replacement: ?342term.

    Nonsense mutation that produces a protein that is 62% of wild-type size.

    Mutations Mapped to the Genome
    Curation Data
    Type
    Location
    Additional Notes
    References
    Nucleotide change:

    C6364392T

    Amino acid change:

    Q342term | swa-PA

    Reported amino acid change:

    ?342term

    Comment:

    Site of nucleotide substitution in mutant inferred by FlyBase based on reported amino acid change.

    Variant Molecular Consequences
    Associated Sequence Data
    DNA sequence
    Protein sequence
     
    Expression Data
    Reporter Expression
    Additional Information
    Statement
    Reference
     
    Marker for
    Reflects expression of
    Reporter construct used in assay
    Human Disease Associations
    Disease Ontology (DO) Annotations
    Models Based on Experimental Evidence ( 0 )
    Disease
    Evidence
    References
    Modifiers Based on Experimental Evidence ( 0 )
    Disease
    Interaction
    References
    Comments on Models/Modifiers Based on Experimental Evidence ( 0 )
     
    Disease-implicated variant(s)
     
    Phenotypic Data
    Phenotypic Class
    Phenotype Manifest In
    Detailed Description
    Statement
    Reference

    In swaVA11 mutants, approximately 70% of stage 10 egg chambers contain thick aggregation of subcortical microtubules with a relative paucity of anterior/lateral microtubules, or occasionally microtubules that accumulate more strongly at the lateral complex compared to the anterior cortex.

    swaVA11 mutants exhibit defects in anterior/lateral microtubules at stage 10, prior to the initiation of streaming, but concomitant with the appearance of subcortical microtubules.

    Approximately 70% of mature swaVA11 oocytes exhibit oocyte nucleus mis-positioning. The nucleus is no longer found in its normal location but in apparently random positions in the ooplasm.

    In a small number of swaVA11 stage 10 oocytes (<20%), the nucleus can be observed in a more lateral position, and the proportion of oocytes with mis-positioned nuclei increases with increasing oocyte maturity.

    There is no evidence that swaVA11 mutant stage 9 embryos undergo premature streaming.

    Embryos derived from swaVA11/Df(1)JF5 females mated to wild-type males often show cuticle defects, ranging from embryos without cuticle and lacking any sign of development (40%), through embryos with a reduction in the number of abdominal segments to embryos that have 8 abdominal segments, with normal or nearly normal abdominal morphology. The most commonly represented cuticular class is embryos that have 4-6 abdominal segments, with the arrangement of segments usually abberant, with segments often fused (40%).

    Defects in actin organisation are first detectable at about stage 10 in mutant oocytes. Small irregularly-shaped actin aggregates and actin spheres are seen below the actin-rich cortical layer. Most of the actin spheres are "hollow", having an actin-rich surface and an actin-poor core. About 30% of stage 10 oocytes have a relatively mild mutant phenotype in which a few clumps and spheres are limited to the anterior subcortical layer of the oocyte. About 10% of stage 10 egg chambers have a larger number of aggregates and spheres which are distributed throughout the oocyte and fused actin spheres. About 60% of oocytes between stages 11 to 14 have detectable defects in actin organisation. In these abnormal oocytes, actin spheres about 3-5μm in diameter are uniformly distributed from the subcortical layer into deeper central cytoplasm. The spheres are more numerous in later stages of oogenesis and a larger fraction of them are hollow. Occasional "double" spheres consisting of two spheres fused at their surface are seen. Tiny actin granules are visible on the surface of the spheres. Incomplete or defective actin furrows are seen at metaphase and anaphase during the blastoderm syncytial cleavages of embryos derived from mutant females, which result in fused actin caps at interphase of the subsequent cell cycle.

    Homozygous females are completely sterile, producing eggs that often develop as far as an incipient larval stage, but which rarely hatch. The small fraction that do hatch have grossly abnormal anterior structures, never grow in size and die soon after hatching.

    External Data
    Interactions
    Show genetic interaction network for Enhancers & Suppressors
    Phenotypic Class
    Suppressed by
    Statement
    Reference

    swaVA11 has viable phenotype, suppressible by Dpse\swaswa.PH

    Suppressor of
    Statement
    Reference

    swa[+]/swaVA11 is a suppressor of female sterile | semidominant phenotype of αTub67C3

    Other
    Statement
    Reference
    Phenotype Manifest In
    Suppressor of
    Statement
    Reference
    Additional Comments
    Genetic Interactions
    Statement
    Reference

    Approximately 66.2% of embryos derived from swaVA11/+;αTub67C3/+ females hatch to apparently normal embryos, compared to approximately 44.8% of embryos derived from αTub67C3/+ females. Approximately 23.4% of embryos derived from swaVA11/+;67C3/+ female flies arrest development before cuticle formation, compared to approximately 37.2% of embryos derived from αTub67C3/+ females. Approximately 10.4% of embryos derived from swaVA11/+;αTub67C3/+ female flies arrest development after cuticle formation but before hatching, compared to approximately 18% in embryos derived from αTub67C3/+ females.

    Xenogenetic Interactions
    Statement
    Reference

    The phenotype is rescued by Dpse\swaswa.PH; swaVA11 females carrying Dpse\swaswa.PH are fertile and produce embryos that continue development to adulthood.

    Complementation and Rescue Data
    Comments
    Images (0)
    Mutant
    Wild-type
    Stocks (0)
    Notes on Origin
    Discoverer
    External Crossreferences and Linkouts ( 0 )
    Synonyms and Secondary IDs (2)
    Reported As
    Name Synonyms
    Secondary FlyBase IDs
      References (7)