FlyBase Aberration Report: Dmel\Df(2L)Sco[rv4]

General Information

Symbol

Df(2L)Sco^rv4

Species

D. melanogaster

Name

Deficiency (2L) Scutoid

FlyBase ID

FBab0001553

Feature type

chromosomal_deletion

Also Known As

Sco^R+4, Df(2L)Sco^R+4

Computed Breakpoints include

35B1-35B2

Features within 35B1--35B10

Sequence coordinates

Member of large scale dataset(s)

Nature of Aberration

Cytological Order

2Lt - 28F1 | 33A2 - 35A4 | 28F5 - 32F4 | 37A2 - 38F6 | 35D2 - 36F11 | 39A2 - 2Rt

Junctions: 3L:4R

(Woodruff and Ashburner, 1979)

Junctions: 1L:2R Junctions: 3L:1R Junctions: 2L:5R Junctions: 6L:4R Junctions: 5L:6R

(Ashburner et al., 1990, Ashburner and Harrington, 1984, Ashburner et al., 1983)

2Lt - 28F1 | 33A2 - p1:bk1 | 28F5 - 32F5 | 37A2 - 38F6 | p1:bk4 - 36F11 | 39A2 - 3Rt

(Roote et al., 1996)

Progenitor

Tp(2;2)Sco

(Roote et al., 1996, Ashburner et al., 1990, Gubb et al., 1990, Ashburner and Harrington, 1984, Ashburner et al., 1983, Ashburner et al., 1980)

Mutagen

X ray

(Ashburner et al., 1980)

Class of aberration (relative to wild type)

chromosomal_deletion

Class of aberration (relative to progenitor)

Breakpoints

35B1-35B2;35D5-35D7

(Woodruff and Ashburner, 1979)

35B1--2;35D5--35D7;[];[];[];[]

(Ashburner et al., 1982)

35B1-35B2;35D1-35D2;28F1-28F5;32F4-33A2;36F11-37A2;38F6-39A2

(Ashburner et al., 1983)

35A4;35D1-35D2;28F1-28F5;32F4-33A2;36F11-37A2;38F6-39A2

(Ashburner et al., 1990, Ashburner and Harrington, 1984)

28F3;35A4

(Gubb et al., 1990)

Causes alleles

Carries alleles

Transposon Insertions

Formalized genetic data

bk2 << l(2)35Cc

Genetic mapping information

Comments

Left break mapped to the DNA (McGill, Chia, Karp and Ashburner, 1988, Genetics 119: 641-61)

Comments on Cytology

28F1-28F5;32F5-33A2; p1:bk1 ; p1:bk4 ;36F11-37A2;38F6-39A2

(Roote et al., 1996)

Chromosome has been drawn with respect to wild type.

(Ashburner and Harrington, 1984, Ashburner et al., 1983)

Other breakpoints are not specified.

(Ashburner et al., 1982)

Complex.

(Ashburner et al., 1980)

Deficiency between 35B1-35B2 and 35D5-35D7 and a complex inversion between 29B, 33F, 36F and 39E.

(Woodruff and Ashburner, 1979)

All limits from polytene analysis (FBrf0033158)

Sequence Crossreferences

DDBJ / EMBL / GenBank

DNA sequence

Protein sequence

Gene Deletion and Duplication Data

Genes Deleted / Disrupted

Complementation Data

Partially deleted / disrupted

noc

(Roote et al., 1996)

stc

(Ashburner et al., 1999.10.12)

Molecular Data

Completely deleted

Partially deleted

Genes NOT Deleted / Disrupted

Complementation Data

Arpc1

(Woodruff and Ashburner, 1979)

(Woodruff and Ashburner, 1979, Woodruff and Ashburner, 1979)

Cul3

(Ashburner et al., 1990, Ashburner et al., 1983)

CycE

(Ashburner et al., 1990, Ashburner et al., 1983)

elA

(Ashburner et al., 1990, Ashburner et al., 1983)

l(2)34Fc

(Woodruff and Ashburner, 1979)

l(2)34Fd

(Woodruff and Ashburner, 1979)

lace

(Ashburner et al., 1990, Ashburner et al., 1983)

NimA

(Woodruff and Ashburner, 1979, Woodruff and Ashburner, 1979)

Pburs

(Ashburner et al., 1990, Ashburner et al., 1983, Woodruff and Ashburner, 1979, Woodruff and Ashburner, 1979)

Pgant35A

(Woodruff and Ashburner, 1979)

PolD3

(Ashburner et al., 1990, Ashburner et al., 1983, Woodruff and Ashburner, 1979)

PolG1

(Woodruff and Ashburner, 1979)

PolG2

(Woodruff and Ashburner, 1979)

Polr2C

(Woodruff and Ashburner, 1979)

(Woodruff and Ashburner, 1979, Woodruff and Ashburner, 1979)

sna

(Ashburner et al., 1990, Ashburner et al., 1983)

Sos

(Woodruff and Ashburner, 1979)

(Woodruff and Ashburner, 1979, Woodruff and Ashburner, 1979)

wor

(Ashburner et al., 1990, Ashburner et al., 1983)

Molecular Data

Genes Duplicated

Complementation Data

Completely duplicated

Partially duplicated

Molecular Data

Completely duplicated

Partially duplicated

Genes NOT Duplicated

Complementation Data

Molecular Data

Affected Genes Inferred by Location

Related Comments

Hypomorphic for stc.

(Ashburner et al., 1999.10.12)

Unusual noc complementation data due to function of the two transcripts, nocA and nocB.

(Roote et al., 1996)

Phenotypic Data

In combination with other aberrations

NOT in combination with other aberrations

Chromosome has no effect on the physical interaction between tandemly duplicated copies of w⁺ and z¹, despite having breakpoints within the critical region.

(Gubb et al., 1990)

Stocks (2)

6093

108607

Notes on Origin

Discoverer

Revertant

Balancer / Genotype Variants of the Aberration

Separable Components

Other Comments

Aberration has no effect on z but has breakpoints within the z critical region.

(Gubb et al., 1990)

Synonyms and Secondary IDs (12)

Reported As

Symbol Synonym

Df(2L)Sco-rv4

(Ashburner et al., 1999.10.12)

Df(2L)Sco4

Df(2L)Sco^R+4

(Ashburner et al., 1982, Ashburner et al., 1980, Woodruff and Ashburner, 1979)

Df(2L)Sco^R+

Df(2L)Sco^rv4

Df(2L)ScoR+4

(Chia et al., 1985)

In(2L)Sco^rv4

In(2L)ScoR4

(Gubb et al., 1990)

In(2L)Scorv4

(Roote et al., 1996)

Sco^R+4

(Ashburner et al., 1990, Ashburner and Harrington, 1984, Ashburner et al., 1983, Woodruff and Ashburner, 1979)

Name Synonyms

Deficiency (2L) Scutoid

Inversion(2L)Scutoid revertant

Secondary FlyBase IDs

References (13)

Report Sections

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