FlyBase Insertion Report: Dmel\P{lArB}rn[89]

General Information

Symbol

Dmel\P{lArB}rn⁸⁹

Species

D. melanogaster

Name

FlyBase ID

FBti0012264

Feature type

transposable_element_insertion_site

Also Known As

rn-lacZ

Description

Inserted Element

P{lArB}

LINE ID

Affected gene(s)

Ecol\lacZ, rn

Viability / fertility

fertile, viable

Associated allele(s)

Ecol\lacZ^rn-89, rn⁸⁹

Stock availability

None publicly available

Genomic Location

Chromosomal Location

3R ( 84D3 )

Sequence Location

3R:7,309,836..7,309,836 [-]

Target / Docking site

Genomic Maps

JBrowse

Member of Large Scale Dataset(s)

Dataset

Description

Detailed Mapping Data

Chromosome (arm)

Sequence Location

3R:7,309,836..7,309,836 [-]

(St Pierre et al., 2002)

Orientation

Cytological location (computed by FlyBase)

84D3 (inferred by FlyBase from sequence location)

Cytological location (reported)

Insertion into Natural transposon

Comments concerning location

Sequence Data

Flanking sequence

Inserted Element

Construct

P{lArB}

Size (Kb)

18.327

Component Allele(s)

Adh^+t3.2

Ecol\lacZ^P\T.A92a

ry^+t7.2

Molecular map

Affected Gene(s)

Insertion may affect gene

Ecol\lacZ

(Dichtel-Danjoy et al., 2009, Terriente et al., 2008, Zecca and Struhl, 2007, Cho and Irvine, 2004, Kolzer et al., 2003, del Alamo Rodriguez et al., 2002, Galindo et al., 2002, St Pierre et al., 2002, Couso, 1998.6.18, Couso and Bishop, 1998)

(Natori et al., 2012, Couso and Bishop, 1998)

Variant Molecular Consequences

Phenotypic Data

Associated Allele

Phenotypic Data

Ecol\lacZ^rn-89

Phenotypic Class Phenotype Manifest in Detailed Description

rn⁸⁹

Phenotypic Class Phenotype Manifest in Detailed Description

Expression Data

Reporter Expression

distribution deduced from reporter

Stage

Tissue/Position (including subcellular localization)

Reference

third instar larval stage

wing disc

(St Pierre et al., 2002)

haltere disc

(St Pierre et al., 2002)

antennal disc

(St Pierre et al., 2002)

leg disc

(St Pierre et al., 2002)

early third instar larval stage

presumptive tarsal segment 3

(Natori et al., 2012)

late third instar larval stage

presumptive tarsal segment 2 -- presumptive tarsal segment 4

(Natori et al., 2012)

Additional Information

Statement

Reference

EcollacZ^rn-89 was first detectable in the gap region between the B-H1 and dac domains as it forms at the beginning of the third instar. Prepupal legs show expression from presumptive tarsal segment 4 to the distal side of the presumptive metatarsus.

(Natori et al., 2012)

In third instar thoracic discs, highly expressed in central region of the discs, in regions corresponding to distal structures; no expression observed in eye disc.

(St Pierre et al., 2002)

Marker for

Reflects expression of

(Natori et al., 2012)

Reporter construct used in assay

Data on Genetic Line

Line ID

Origin as a multiple insertion line

Progenitor(s) within the Genome

Related Aberration or Balancer

Aberration

Balancer

Stocks (0)

External Crossreferences and Linkouts ( 0 )

Comments

P{lArB} insertion at position -440bp (coordinates relative to accession number AF395905)

(St Pierre et al., 2002)

Synonyms and Secondary IDs (4)

Reported As

Symbol Synonym

P{lArB}rn⁸⁹

(Couso and Bishop, 1998, FlyBase, 1992-)

rn-lacZ

(Perea et al., 2013, Natori et al., 2012, Dichtel-Danjoy et al., 2009, Terriente et al., 2008, Zecca and Struhl, 2007, Cho and Irvine, 2004, Kolzer et al., 2003, del Alamo Rodriguez et al., 2002, Galindo et al., 2002)

rn⁸⁹

(St Pierre et al., 2002)

rnZ

(Dichtel-Danjoy et al., 2009)

Name Synonyms

Secondary FlyBase IDs

References (14)

Report Sections

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