Cap
Please see the JBrowse view of Dmel\SMC3 for information on other features
To submit a correction to a gene model please use the Contact FlyBase form
AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Some regions with low pLDDT may be unstructured in isolation.
Gene model reviewed during 5.50
7.0 (northern blot)
There is only one protein coding transcript and one polypeptide associated with this gene
1231 (aa)
Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\SMC3 using the Feature Mapper tool.
The testis specificity index was calculated from modENCODE tissue expression data by Vedelek et al., 2018 to indicate the degree of testis enrichment compared to other tissues. Scores range from -2.52 (underrepresented) to 5.2 (very high testis bias).
Comment: maternally deposited
The 4.0 and 7.0 kb Cap transcripts are found at about equal levels in adults. The 7.0 kb transcript is expressed at higher levels in larvae.
JBrowse - Visual display of RNA-Seq signals
View Dmel\SMC3 in JBrowsePlease Note FlyBase no longer curates genomic clone accessions so this list may not be complete
Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see JBrowse for alignment of the cDNAs and ESTs to the gene model.
For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.
polyclonal
Source for identity of: Cap SMC3
Source for identity of: SMC3 Cap
Renamed from 'Cap' to 'SMC3' to (i) better distinguish the gene from the non-SMC genes with 'Cap'-like symbols and from the unrelated 'CAP' gene; and (ii) make it consistent with other SMC gene nomenclature.