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Please see the JBrowse view of Dmel\dy for information on other features
To submit a correction to a gene model please use the Contact FlyBase form
AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Some regions with low pLDDT may be unstructured in isolation.
Gene model reviewed during 5.52
Gene model reviewed during 5.56
4.2 (northern blot)
There is only one protein coding transcript and one polypeptide associated with this gene
Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\dy using the Feature Mapper tool.
The testis specificity index was calculated from modENCODE tissue expression data by Vedelek et al., 2018 to indicate the degree of testis enrichment compared to other tissues. Scores range from -2.52 (underrepresented) to 5.2 (very high testis bias).
JBrowse - Visual display of RNA-Seq signals
View Dmel\dy in JBrowsePlease Note FlyBase no longer curates genomic clone accessions so this list may not be complete
Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see JBrowse for alignment of the cDNAs and ESTs to the gene model.
For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.
FBrf0054173 suggested that the 'Andante' mutation maps to the dy locus. See Jackson, 2002.7.26, personal communication to FlyBase for revision of that suggestion: the 'Andante' mutation maps to the CkIIβ locus - see CkIIβAnd. CkIIβAnd was found to be linked to an allele of dy, dyQ189stop, explaining the confusion.
The 'Andante' mutant chromosome carries two independent EMS-induced mutations, one in dy (dyQ189stop) and one in CkIIβ (CkIIβAnd). The dyQ189stop mutation has no effect on rhythmicity, rather the CkIIβAnd allele is responsible for the circadian long-period phenotype of the mutant chromosome.
FBrf0054173 suggests that the 'Andante' mutant circadian rhythm phenotype maps to the dy locus. However, FBrf0151660 indicates that the 'Andante' mutant chromosome carries two separable lesions: a dy mutation that has no effect on rhythmicity and a mutation in CkIIβ which is responsible for the mutant circadian rhythm phenotype.
Source for identity of: dy CG9355