FB2024_03 , released June 25, 2024
Allele: Dmel\SoxNU6-35
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General Information
Symbol
Dmel\SoxNU6-35
Species
D. melanogaster
Name
FlyBase ID
FBal0141377
Feature type
allele
Associated gene
Associated Insertion(s)
Carried in Construct
Key Links
Genomic Maps

Mutagen
Nature of the Allele
Progenitor genotype
Cytology
Description

Nucleotide substitution: C?T.

Amino acid replacement: ?133term.

Amino acid replacement: Q133term.

Mutations Mapped to the Genome
Curation Data
Type
Location
Additional Notes
References
Nucleotide change:

C8826890T

Reported nucleotide change:

C?T

Amino acid change:

Q133term | SoxN-PA; Q133term | SoxN-PB

Reported amino acid change:

Q133term

Variant Molecular Consequences
Associated Sequence Data
DNA sequence
Protein sequence
 
Expression Data
Reporter Expression
Additional Information
Statement
Reference
 
Marker for
Reflects expression of
Reporter construct used in assay
Human Disease Associations
Disease Ontology (DO) Annotations
Models Based on Experimental Evidence ( 0 )
Disease
Evidence
References
Modifiers Based on Experimental Evidence ( 0 )
Disease
Interaction
References
Comments on Models/Modifiers Based on Experimental Evidence ( 0 )
 
Disease-implicated variant(s)
 
Phenotypic Data
Phenotypic Class
Phenotype Manifest In
Detailed Description
Statement
Reference

Mutant embryos show a moderate loss of denticles.

Virtually all thoracic and abdominal eg- and ems-expressing neurons and glia are missing from the central nervous system of homozygous embryos. The embryos show a substantial reduction in the longitudinal axon tracts; 60% of hemisegments show complete loss of longitudinal tracts. The commissures fail to separate in 52% of segments and are absent in 2%. The regular axonal fasciculation pattern is disrupted and many axons inappropriately cross the midline. There appears to be no difference in phenotype along the anteroposterior axis. The embryos have no segmentation defects. Within the central nervous system, the spacing between two segments in the middle of the embryo (most often A3 and A4) is greatly increased, while spacing in the neighbouring segments is reduced. In extreme cases there are gaps in the neuroectoderm, however, no segments are lost. A small number of embryos (less than 5%) fail to complete germband retraction. Loss of neuroblasts is seen, with S1 neuroblasts (NBs) in the intermediate and lateral columns being more affected that those in the medial column. Later born intermediate and lateral NBs are more affected than S1 NBs. Loss of S1 neuroblasts is seen; NB1-1 is missing in 12% of hemisegments, MP2 is missing in 5%, NB5-2 is missing in 38%, NB7-1 is missing in 4%, NB5-3 is missing in 52% of hemisegments, NB2-5 is missing in 36%, NB5-6 is missing in 69%, NB7-4 is missing in 23% and NB3-5 is missing in 56%. 100% of NB6-4 S3 neuroblasts are missing, and NB2-4 (S4 neuroblast), NB3-3 (S4 neuroblast), NB4-4 (S4 neuroblast) and NB7-3 (S5 neuroblast) are nearly always missing. A number of eve-expressing neurons are missing; the CQ neurons are missing in 3% of hemisegments, RP2 neurons are missing in 96% and the eve lateral cluster (ELC) is missing in 100%, however, 0% of aCC/pCC neurons are missing.

External Data
Interactions
Show genetic interaction network for Enhancers & Suppressors
Phenotypic Class
Enhanced by
Statement
Reference
Enhancer of
Statement
Reference
Phenotype Manifest In
Enhanced by
Statement
Reference

SoxNU6-35 has denticle phenotype, enhanceable by Dr72/D[+]

SoxNU6-35 has neuroblast NB5-3 phenotype, enhanceable by Dr72

Enhancer of
Statement
Reference

SoxNU6-35 is an enhancer of neuroblast NB5-3 phenotype of Dr72

Suppressor of
Statement
Reference

SoxNU6-35/SoxN[+] is a suppressor of denticle | ectopic phenotype of pan2

SoxNU6-35/SoxNU6-35 is a suppressor of denticle | ectopic phenotype of pan2

SoxNU6-35 is a suppressor of denticle | ectopic phenotype of wgl-17

Other
Additional Comments
Genetic Interactions
Statement
Reference

wgl-17; SoxNU6-35 double mutant embryos have cuticles with few or no ectopic denticles.

SoxNU6-35/+ partially suppresses the formation of ectopic denticles seen in pan2 mutant larvae, while pan2 ; SoxNU6-35 double mutants have the same cuticle phenotype as SoxNU6-35 single mutants.

Dr72/+ strongly enhances the loss of denticle phenotype seen in SoxNU6-35 embryos, such that denticle formation is almost completely abolished.

Dr72 SoxNU6-35 double mutant embryos show severe disruption in the organisation and structure of the central nervous system. There is a complete loss of longitudinal axons in many segments and frequent gaps in the neuropil. Commissures are often absent, and those that do form are virtually never separated. The aCC/pCC and CQ neurons are missing in at least 15% of hemisegments. RP2 neurons are missing in 94% of hemisegments and eve lateral cluster neurons are missing in 99% of hemisegments. Neuroblast NB5-3 is missing in 79% of hemisegments.

Xenogenetic Interactions
Statement
Reference
Complementation and Rescue Data
Partially rescued by
Comments
Images (0)
Mutant
Wild-type
Stocks (0)
Notes on Origin
Discoverer
External Crossreferences and Linkouts ( 0 )
Synonyms and Secondary IDs (1)
Reported As
Symbol Synonym
Name Synonyms
Secondary FlyBase IDs
    References (4)