FB2024_03 , released June 25, 2024
Assay: scRNAseq_2020_Cattenoz_NI_seq
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General Information
Name
scRNAseq_2020_Cattenoz_NI_seq
Species
D. melanogaster
Assay type
FlyBase ID
FBlc0003730
Project
Data Provider
Title
Single-cell RNA-seq of hemocytes from non-infested third instar larvae
Accessions
    Biosample Source
    Overview
    Sex
    Other tissues studied
    Cell component
    Cell line
    Key genes
    Sample preparation

    Twenty female larvae were collected at the wandering L3 stage (108-117 h AEL at 25oC) and bled in Schneider medium complemented with N-phenylthiourea on ice. Both circulating and resident pools of hemocytes were collected by first puncturing the cuticle to release the circulating hemocytes, then by scrapping the cuticle with fine forceps to release the resident hemocytes (FBrf0230406). After bleeding, the hemolymph was filtered on a 100um-mesh to remove cell aggregates and wasp eggs.

    Biosamples used (1)
    Biosample
    Type
    Title
    Hemocytes from non-infested third-instar larvae
    Assay Details
    Key genes
    Protocol

    For each condition, single-cell RNA-seq libraries were prepared from 10,000 cells using the Chromium Single Cell 3' Reagent Kits v2 (10x Genomics).

    Mode of Assay

    RNA-seq libraries were sequenced on the Illumina HiSeq 4000 platform with paired-end 100 bp reads.

    Comments
    Associated Data
    Size
    10846590 Number of reads
    Files
    Additional Information
    Synonyms and Secondary IDs (2)
    Reported As
    Symbol Synonym
    scRNAseq_2020_Cattenoz_NI_seq
    Name Synonyms
    Single-cell RNA-seq of hemocytes from non-infested third instar larvae
    Secondary FlyBase IDs
      References (1)