FB2024_03 , released June 25, 2024
Physical Interaction report
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General Information
Interaction Type
Interacting Genes
FlyBase ID
FBig0000101439
Interaction Network
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Protein
RNA
Selected Interactor(s)
Common Interactor(s)
Reported Interactions
FBrf0053886-2.coIP.A
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
sc 

T4

bait

[35]S label

da 

DA

prey

[35]S label

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; bait produced and labeled by in vitro translation; prey produced and labeled by in vitro translation.

The da-l(1)sc interaction is stronger than da-ac, which is stronger than da-sc.

FBrf0057896-1.EMSA.A
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
da 

da

neutral component
da 

da

neutral component
da 

da

neutral component
sc 

sc

neutral component
sc 

sc

neutral component
sc 

sc

neutral component
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

A [32]P labeled DNA probe consisting of an E box was mixed with sc and/or da. Cooperative binding to the DNA was observed by EMSA.

da and sc bind cooperatively to DNA. For the DNA probe tested, neither da nor sc could bind alone.

Interaction in vitro; proteins produced as a recombinant fusion proteins in bacterial system.

FBrf0065441-2.EMSA.A
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
da 

da

neutral component
da 

da

neutral component
da 

da

neutral component
sc 

sc

neutral component
sc 

sc

neutral component
sc 

sc

neutral component
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

A [32]P labeled DNA probe consisting of an E box from a ase regulatory fragment was was mixed with da and/or sc. Cooperative binding to the DNA was observed by EMSA.

Interaction in vitro; proteins produced as a recombinant fusion proteins in bacterial system.

FBrf0075104-4.Y2H
Description
physical association
Assay
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
da 

da

bait
sc 

sc

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Two-hybrid system: yeast, using a lacZ reporter under the control of hb regulatory sequence.

The hb reporter construct responds more strongly to the da-sc combination than to the da-l(1)sc combination, or to da alone. sc or l(1)sc alone do not have activity.

Source was yeast cell line; bait produced as transgenic fusion protein; prey produced as transgenic fusion protein (prey was previously cloned reagent).

FBrf0081934-1.coIP.WB
Description
physical association
Collection
Cell line used
Participants
Corresponds to
Reported as
Role
Note
da 

Da

bait
sc 

Scute

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Bait endogenous to embryonic extract.

Prey endogenous to embryonic extract.

FBrf0081934-2.coIP.WB
Description
physical association
Collection
Cell line used
Participants
Corresponds to
Reported as
Role
Note
sc 

Scute

bait
da 

Da

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Bait endogenous to embryonic extract.

Prey endogenous to embryonic extract.

FBrf0083269-4.Y2H
Description
physical association
Assay
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
sc 

Sis-b

bait

fused to LexA DNA-binding domain

sc 
da 

Da

prey

fused to B42 activation domain

da 
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
sc 
bHLH domain
sufficient binding region
aa 10-217
da 
bHLH domain
sufficient binding region
aa 515-619
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was yeast cell line; bait produced as transgenic fusion protein; prey produced as transgenic fusion protein (prey was previously cloned reagent).

sc interacts with da but not with sisA or dpn.

Two-hybrid system: yeast LexA-BD/B42-AD

FBrf0083269-8.Y2H
Description
physical association
Assay
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
da 

Da

bait

fused to LexA DNA-binding domain

da 
sc 

Sis-b

prey

fused to B42 activation domain

sc 
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
da 
bHLH domain
sufficient binding region
aa 515-619
sc 
bHLH domain
sufficient binding region
aa 10-217
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was yeast cell line; bait produced as transgenic fusion protein; prey produced as transgenic fusion protein (prey was previously cloned reagent).

Two-hybrid system: yeast LexA-BD/B42-AD

FBrf0100349-1.Y2H
Description
physical association
Assay
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
da 

DA

bait

fused to GAL4 DNA-binding domain

da 
sc 

SC

prey

fused to GAL4 activation domain

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
da 
C-terminal region
sufficient binding region
aa 518-710

DeltaN construct used for screen

Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was yeast cell line; bait produced as transgenic fusion protein; prey produced as transgenic fusion protein (prey from genomic expression library).

Two-hybrid system: yeast GAL4-BD/GAL4-AD

FBrf0128540-3.EMSA.A
Reference
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
sc 

sc

neutral component

GST tag

sc 

sc

neutral component

GST tag

sc 

sc

neutral component

GST tag

da 

da

neutral component

GST tag

da 

da

neutral component

GST tag

da 

da

neutral component

GST tag

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; proteins produced as a recombinant fusion proteins in bacterial system.

FBrf0128540-4.EMSA.A
Reference
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
sc 

sc

neutral component

GST tag

sc 

sc

neutral component

GST tag

sc 

sc

neutral component

GST tag

da 

da

neutral component

GST tag

da 

da

neutral component

GST tag

da 

da

neutral component

GST tag

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; proteins produced as a recombinant fusion proteins in bacterial system.

FBrf0187787-3.Y2H
Description
physical association
Assay
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
da 

Da

bait

fused to LexA DNA-binding domain

da 
sc 

Sc

prey

fused to B42 activation domain

sc 
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
sc 
Sc bHLH domain
sufficient binding region
aa 1-260
da 
Da bHLH domain
sufficient binding region
aa 551-710
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was yeast cell line; bait produced as transgenic fusion protein; prey produced as transgenic fusion protein.

Two-hybrid system: yeast LexA-BD/B42-AD

External Crossreferences and Linkouts ( 1 )
Linkouts
MIST - An integrated Molecular Interaction Database
References (9)