FB2024_03 , released June 25, 2024
Physical Interaction report
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General Information
Interaction Type
Interacting Genes
FlyBase ID
FBig0000098235
Interaction Network
Interactions Browser links
cry network
tim network
esyN Network Diagram
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Protein
RNA
Selected Interactor(s)
Common Interactor(s)
Reported Interactions
FBrf0109474-1.coIP.WB
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
tim 

TIM

bait
cry 

CRY

prey

GFP tag

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was cell extract of S2 cell line; bait produced from transfected construct; prey produced from transfected construct.

The cry-tim interaction was observed in cells kept in constant darkness and in cells exposed to light for one hour, but not in cells exposed to continuous light.

FBrf0109474-2.Y2H
Description
physical association
Assay
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
cry 

CRY

bait

fused to LexA DNA-binding domain

cry 
tim 

TIM

prey

fused to VP16 activation domain

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
cry 
residue D410
mutation disrupting interaction
aa 410

D410N (cry[b] allele), coordinates relative to cry-PA

Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Two-hybrid system: yeast LexA-BD/VP16-AD

Source was yeast cell line; bait produced as transgenic fusion protein; prey produced as transgenic fusion protein (prey was previously cloned reagent).

This interaction was observed only in cells exposed to constant light (not constant darkness).

FBrf0137204-2.Y2H
Description
physical association
Assay
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
cry 

CRY

bait

fused to LexA DNA-binding domain

tim 

TIM

prey

fused to B42 activation domain

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was yeast cell line; bait produced as transgenic fusion protein; prey produced as transgenic fusion protein (prey was previously cloned reagent).

Two-hybrid system: yeast LexA-BD/B42-AD

FBrf0179150-1.coIP.WB
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
cry 

CRY

bait

Myc tag

tim 

TIM

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was adult heads of transgenic fly line; bait produced from tagged transgenic construct; prey produced from endogenous gene.

FBrf0179150-3.coIP.WB
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
cry 

CRY

bait

Myc tag

tim 

TIM

prey

HA tag

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was cell extract of S2 cell line; bait produced from transfected construct; prey produced from transfected construct.

FBrf0194310-2.Y2H
Description
physical association
Assay
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
cry 

dCRY

bait

fused to LexA DNA-binding domain

cry 
cry 
cry 
tim 

dTIM

prey

fused to B42 activation domain

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
cry 
C terminal domain
necessary binding region
aa 493-542
cry 
TRAF2 ligand motif and hypothetical phosphorylation site
mutation disrupting interaction
aa 526

S526A

cry 
PDZ binding segment EM4
mutation disrupting interaction
aa 530

S530P

Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was yeast cell line; bait produced as transgenic fusion protein; prey produced as transgenic fusion protein (prey was previously cloned reagent).

Two-hybrid system: yeast LexA-BD/B42-AD, interaction depends on exposure to light.

FBrf0206737-1.Y2H
Description
physical association
Assay
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
tim 

Tim

bait

fused to LexA DNA-binding domain

cry 

Cry

prey

fused to B42 activation domain

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was yeast cell line; bait produced as transgenic fusion protein; prey produced as transgenic fusion protein (prey was previously cloned reagent).

Two-hybrid system: yeast LexA-BD/B42-AD

FBrf0221205-3.Y2H
Description
physical association
Assay
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
cry 

CRY

bait

fused to LexA DNA-binding domain

tim 

TIM

prey

fused to B42 activation domain

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was yeast cell line; bait produced as transgenic fusion protein; prey produced as transgenic fusion protein (prey was previously cloned reagent).

The cry-tim interaction is only detected when yeast cells are grown in light.

Two-hybrid system: yeast LexA-BD/B42-AD

Positive control.

FBrf0223732-1.PD.MW
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
tim 

TIM

bait

biotin tag

tim 
tim 
cry 

CRY

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
tim 
C-terminal-tail-like helix
sufficient binding region
SNAKVPIDTSHFFWLVTYFLKKK
tim 
C-terminal-tail-like helix
mutation disrupting interaction
FWL

FWL mutated to AAA

Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; bait produced by chemical synthesis; prey produced as a recombinant fusion protein in baculovirus-infected insect cell system.

Treatment of cry with EDTA, which reduces the bound-FAD chromophore to anionic semiquinone (ASQ), bypasses the requirement of light in the cry-tim interaction.

The cry W536F mutant was used for the binding assay as it exhibits the sharpest light-induced conformational changes, as determined by partial trypsin digestion.

FBrf0236441-1.coIP.WB
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
cry 

cry

bait

GFP tag

tim 

TIM

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was bodies of transgenic fly line; bait produced from tagged transgenic construct; prey produced from endogenous gene.

FBrf0248217-1.coIP.TV
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
tim 

TIM

bait

HA,SNAP tag

cry 

CRY

prey

CLIP tag

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Wildtype cry binds tim preferentially in the dark while a version of cry with the C-terminal tail (CTT) deleted binds tim equally well in light and dark.

Source was cell extract of S2 cell line; bait produced from transfected construct; prey produced from transfected construct.

FBrf0253665-1.PD
Reference
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
tim 

TIM

bait

HA-SNAP tag

cry 

CRY

prey

CLIP tag

cry 
cry 
cry 
cry 
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
cry 
CTT light activated domain
sufficient binding region
aa 519-542

coordinates relative to cry-PA

cry 
light activated residue 378
sufficient binding region
aa 378

H378K/R/C/F; coordinates relative to cry-PA.

cry 
light activated residue 377
sufficient binding region
aa 377

H377L/A; coordinates relative to cry-PA.

cry 
FAD photoreduction residue 394
mutation decreasing interaction
aa 394

W394F; coordinates relative to cry-PA.

Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Wild-type cry interaction with tim increased with exposure to light, but does not have an effect on cry delta-CTT, aa 377 or aa 378 mutants\' interaction with tim. However, cry delta-CTT and aa 377 mutants had an overall increased interaction with tim in both light and dark conditions.

Source was cell extract of S2 cell line; bait and prey produced from transfected construct.

FBrf0256427-1.PD.CL.CH.EM
Reference
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
tim 

Tim

bait

Alfa tag

cry 

Cry

prey
cry 
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
cry 
C terminal domain
mutation increasing interaction
aa 519-542

coordinates relative to cry-PA; deletion of aa 519-542 results in constitutive binding to tim.

Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was cell extract of S2 cell line; bait produced from transfected construct; prey produced from transfected construct.

FBrf0256427-1.PD.CL.CH.MS
Reference
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
tim 

Tim

bait

Alfa tag

cry 

Cry

prey
cry 
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
cry 
C terminal domain
mutation increasing interaction
aa 519-542

coordinates relative to cry-PA; deletion of aa 519-542 results in constitutive binding to tim.

Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was cell extract of S2 cell line; bait produced from transfected construct; prey produced from transfected construct.

FBrf0256427-1.PD.WB
Reference
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
tim 

Tim

bait

HA-SNAP tag

tim 
tim 
cry 

Cry

prey

CLIP tag

cry 
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
cry 
C terminal domain residue 377
mutation increasing interaction
aa 377

coordinates relative to cry-PA; H377L results in constitutive binding to tim.

tim 
C terminal domain
sufficient binding region
aa 1133-1398
tim 
interaction domain
mutation decreasing interaction
aa 571-1398aa 571-1205aa 1-1132
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was cell extract of S2 cell line; bait produced from transfected construct; prey produced from transfected construct.

External Crossreferences and Linkouts ( 1 )
Linkouts
MIST - An integrated Molecular Interaction Database
References (11)