Please see the JBrowse view of Dmel\Pde1c for information on other features
To submit a correction to a gene model please use the Contact FlyBase form
AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Some regions with low pLDDT may be unstructured in isolation.
Gene model reviewed during 5.53
Gene model reviewed during 5.47
Gene model reviewed during 5.56
Annotated transcripts do not represent all supported alternative splices within 5' UTR.
Annotated transcripts do not represent all possible combinations of alternative exons and/or alternative promoters.
Low-frequency RNA-Seq exon junction(s) not annotated.
Tissue-specific extension of 3' UTRs observed during later stages (FBrf0218523, FBrf0219848); all variants may not be annotated
Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\Pde1c using the Feature Mapper tool.
The testis specificity index was calculated from modENCODE tissue expression data by Vedelek et al., 2018 to indicate the degree of testis enrichment compared to other tissues. Scores range from -2.52 (underrepresented) to 5.2 (very high testis bias).
JBrowse - Visual display of RNA-Seq signals
View Dmel\Pde1c in JBrowse2-45
2-38.9
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see JBrowse for alignment of the cDNAs and ESTs to the gene model.
For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.
Source for merge of: Pde1c CG14943 CG14944 CG31757 CG31758
Annotation CG42325 split in release 5.47 of the genome annotation; split supported by EST and RNASeq coverage data. An exon of CG42325 has been made into a distinct annotation, CG44008; CG44008 is a reinstatement of CG31758 from release 5.2. The remainder of CG42325 forms the CG44007 annotation, and retains the function and name (Pde1c) of CG42325.
Annotations CG14940, CG14943, CG14944, CG31757 and CG31758 merged as CG42325 in release 5.9 of the genome annotation.
Annotation CG14942 split into CG31757 and CG31758 in release 3 of the genome annotation.
Source for identity of: Pde1c CG14940