FB2024_03 , released June 25, 2024
Allele: Dmel\Tip60CR70506-KO-TG4.0
Open Close
General Information
Symbol
Dmel\Tip60CR70506-KO-TG4.0
Species
D. melanogaster
Name
FlyBase ID
FBal0390504
Feature type
allele
Associated gene
Associated Insertion(s)
Carried in Construct
Key Links
Genomic Maps

Allele class
Nature of the Allele
Allele class
Progenitor genotype
Cytology
Description

A TI{CRIMIC.TG4.0} DNA cassette has been inserted into Tip60, in a coding intron, and is predicted to gene trap all annotated transcripts of the gene. In addition, the coding exons of Tip60 downstream of the inserted gene trap cassette have been deleted. The TI{CRIMIC.TG4.0} cassette was inserted via the CRISPR/Cas-9 hybrid technique, using two gRNAs that target Tip60 : one targeted to a coding intron (TAGGGCGGCCTGCAAGTTTGCGG) and the other to a non-coding exon in the 3' UTR (AAGATGAGGAGATTACCATTTGG). The PCR check of the insertion gave multiple bands for the left flank and the expected sized product for the right flank. The insertion junction of the right flank was verified by sequencing. The deletion associated with the insertion is 286 bp upstream of the annotated 5' end of the tyf gene and may affect its expression. The other end of the deletion is only 19 bp from the annotated 3' end of the dgt4 gene and may affect proper mRNA 3' end formation.

Allele components
Component
Use(s)
Mutations Mapped to the Genome
Curation Data
Variant Molecular Consequences
Associated Sequence Data
DNA sequence
Protein sequence
 
Expression Data
Reporter Expression
Additional Information
Statement
Reference
 
Marker for
Reflects expression of
Reporter construct used in assay
Human Disease Associations
Disease Ontology (DO) Annotations
Models Based on Experimental Evidence ( 0 )
Disease
Evidence
References
Modifiers Based on Experimental Evidence ( 0 )
Disease
Interaction
References
Comments on Models/Modifiers Based on Experimental Evidence ( 0 )
 
Disease-implicated variant(s)
 
Phenotypic Data
Phenotypic Class
Phenotype Manifest In
Detailed Description
Statement
Reference
External Data
Interactions
Show genetic interaction network for Enhancers & Suppressors
Phenotypic Class
Phenotype Manifest In
Additional Comments
Genetic Interactions
Statement
Reference
Xenogenetic Interactions
Statement
Reference
Complementation and Rescue Data
Comments
Images (0)
Mutant
Wild-type
Stocks (1)
Notes on Origin
Discoverer
External Crossreferences and Linkouts ( 0 )
Synonyms and Secondary IDs (1)
Reported As
Symbol Synonym
Tip60CR70506-KO-TG4.0
Name Synonyms
Secondary FlyBase IDs
    References (1)