FB2024_03 , released June 25, 2024
Transcript: Dmel\CG42700-RJ
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General Information
Symbol
Dmel\CG42700-RJ
Species
D. melanogaster
Annotation Symbol
CG42700-RJ
FlyBase ID
FBtr0345483
Feature type
mRNA
Associated gene
Dmel\CG42700
Evidence Rank
Length (nt)
4712
Evidence Score
Genomic Location
Genomic Maps
cDNA Clones Consistent with the Transcript ( 1 )
cDNA Clones, Fully Sequenced
Exact Match
    Contained within the annotated transcript, internally consistent
    End(s) extend beyond the annotated transcript, internally consistent
      cDNA Clones, End Sequence Only (ESTs)
      Contained within the annotated transcript, internally consistent
        End(s) extend beyond the annotated transcript, internally consistent
          Sequence
          Sequence Downloader
          TCAGTCGCCAGCAGGACATCGAGCAGTGCAAGTCGCGTGGTCGCGCTTTTCCGATAACTCGCCTGTGGTTGTTGCTCGTG
TGACTCTGACTCTGACTGCTGCTGCTGCTGCTGCTGCAGTGGCACGTGAAGTTCTGTGTGGACTGCCTAAAGTTTCGATT
CGTCGTCGCCTGCGTGTCCTTGCCGCATCCTTAGCCTTGCTCACGGTCGCCCGCCCGAGAGCCAATTGAATGCAGTTGCC
GTGGTGTGCTGTGGATGTTAGAAGGGAATAGAAGCCAGCATAACCCCGAGACATTTGCAATCCGTGCATTAGCATTAGCA
TAAAGTGCCTGCCTGATATATTGACGCACAATCGCCGGATAACGAGAAATGCCATAAGCCCCGGAAAAGCAGCAAGCCAA
CAAACCAGCAACCAAGGCTGCAGGTGCACCAGCGCCAGTAGCAGCGGAAGTGCGCCTGCCAGACGACAAAAAGAAAATGC
ATTTAGTTTTCCAGTAAAGTGAAACGCAGCAGCAGAGATGAGCGAACGGGGCAGCGGGGGAGCGGTGACGGGGGGTCGGC
ATGCTCGCGTTAGTCCAACGCCAGGACGTGGCAGCAAGATTGCGTATACGCCGTGTCCGCGCTCCGAACCGCCGCAGGAT
CTGGCGCTTGCCGTTCCGCCGCCGCCGCGCAATTGCCTGGCCATCCCGATGTCCTCACTGCAAACGGCCAATGGACCCGG
CACAAAAGTGAACTTTGGTGGCGGCGCCAACTCGGGAGTCACACGAGCGGAACCAATCTCATTGGCCACCCTGGATCGCG
ACTGCTTCATCATTCCCGTGCACAGTGTGGACCGCTTCCTGCCAGCTGGCATTCCTCTGCCCGCCTTAAGTGCCGATGGT
AAGGCCACAAGCCCTCTAAGTGTCTTGGAAGTCTCCGATCCGAAGCTGTGCATTCTGGTGCATTTGATGAGTCCCCTGGA
GGCCATCGATCCGGTAATGGAGTCGCCACTAGCGCATCCGCTGCTCAAGCAGCGCTCCATTGCCGCCGAATTGGTGACCG
AAGTGCAGCAGGCCAACACGGCAGTGGGCGGAATGCTGCTGGCCAACATGGAGAAGAGCTCTGAGTTCCCCTTCATCTCG
TACTACCTGATCAATACGCTGCAAACGGATCCTTCCAGCTTCTATGCTGGCCTGCGCGTCTCCTCGCTGTCCAAGTTTGA
GCCAAAGGCCCTCAAATACACTGCCGCCCACACACTGGATCTGTATAGCGAGGTGGCTGCCATTTGCCGGCCGCCGTTGG
TTTTGCCCTCCAACGAGGTGGGCAGCTTCAAGAAGTCGCAGACCGCGGCCACCGGCTACATTATTAGCGTGTTCAAGGTT
TTCGAGGGCGACGATGGCGAACGATTCGAAAAGAACTGGCTCTACTGGACCGGAGCACGGATGTTGTACAGGTACCTGCC
ACGTGCCGCGGGCCTGAGGCGCATCGCCCTGCACAAGAGCACCTCGCAGAAGGGCGACAAGATGTATCTGCTGGTTTGCG
AGTGCGCCGAGCTGCTGAAGGACATCTCGCTGGCCGCCTTCCTGATTCCGGCGCTGCGAGCTCGGCTGTGCGGATACACC
GGACTCTATCGACCAATACAGGCCTTCTAGTCCAGAGCGCTGGAGTCGCGTATTTTTCTATTTGTATCTGTATATATAGT
GGATCTGGAGTATGGAGTAGTAGTCTATGGATAAACTAATGCGAAACAAACACTTGAATGTGAAGGAAACTGCACCTGTT
ACGTGATTCTAATTCGATATTAACTAGGCCTATACAAATTTTTCAAATCTCTCTAGTAAAAGTCGGCAATATCAGCGCTG
CGAAAGTGCAGGGGGTTAATGTGCTGGTTAACCCTCGATTAGGCATCTAACTTAAGTAGTAGACAATATACTCAAGGTAA
CTTCATATCGTGTGCTAGATTTTTCTATAAATCATATAGAGGCCAGCCCAATTAATAGGACCATATCTAGTGTGAGTTGG
TAGCAAAGAACTTCCATTTTAGCCACAGTGGGAACTATATATGTATACCGATATATCATAGTAGTAATTCACATATTTGA
ACGCTGAATTTTGCGCTGAAATGTAGGCTATGAAATCTGCAAACCAAAAGTCAATTCTTAGCATTAAAAACCTAAATGAT
TGTCAAGCTGGGGAATGAATTTAATTGAAAGGGTTTCATCAGAGGGATGGGGGATATAGCTAACTTTGCCCAAATCTAAC
AGAAATCTGCCAAAGATATAAGCAAATCTAAACTCAATTTGAATCAAACAATTGTTTAAAATTGCATATTTTATATATCT
AAGCAAATGATTAAGCCAAATACGATTTTCAATCAAAACATTGACTAATTATTGCTTGGCTACAGCTTGCCACTTACATT
TATAACAATTGTAAATAGTTTGATGAATTTTTAAGGCACTTGCTCCGAATACACAAAAAACGCCAGATTCCTGGCCTATA
CATATTTGAGAACTATATAATTTTGCACAATAACAACAGAATCAAAAAGTGCTGTGATAATTAAACTAAAGCAGAGCAGA
GCCGCCAATGCAAAGAAAATAAAAGTAATGAAAACCAATGAATAGGGATAATCCCAGCCATAGAACATACAATAATTTCA
CCCAGTCAAAGACAATATCATTTAGCTACCATTGAATATTCACTGGTCTGTGTGTGTTTTTTTTTTTTTTGAAAACAAAT
CCAATTAATTAGATTACCTAAAAACAGATAACTCTCAATGCTTATGCTAAGCCTAAAGCCTAAGAATATATTAATTACCA
ATTGCATTAATAATAAAGCGTAACACTAAAATACACTAGAGTAGTCCTTTAGCCAAAGATATTGTCGAACAAGTATCCGC
CACGTGGGCTCTTAAAGTCCGCCTCGCGTTTTCGATGGATTATGTAGGCCTCGAACTTCTGCGTCTGCAATGGACCCCAA
TTGGCAGTGGGTTGCATGGCCAGTCCGAATTTCTGTTGAACATTACACACATGTAGTATTTATATTTTCAAAAATATATA
ACCCATTTACTCACACTGCCAAAAGTCTTTCCTGGCTGCTGGTAAATCGTCACCAAAGCCCAGAAGGGCAACTGCAGCAC
ACCCAGTCCCCAGATAATCCATCCAGCCATATAGTAGACCGGCGGATACTGAACACCTCGGTACGTCAGAGGTTCGTAGC
TGAAGAGCATATAGACGAGGACCAGGAACATCAGACCAGGTGCCACAATGGCCCAGCAGATGCGCCAATAGAAGCTGGTC
TTCACATTCAGCATGAACTCAATGTCGCTGCAGATGCGCTTCACACCATAAATCCAGCCCACTGCCAACAATTCTGCAAT
GGCCAAGACCAGGGCTATAAAAGTGCAGCCATAAAAGTCGACGAGATTCAGTACGAACTGTCCGCCCGGAGTCATGTACA
CCAGGCCACAGAGGAATCCAATTATCGAAGCACTCACGGCCAGCAGCCAGTGGGGCAAATGGGTGAATCGATCCTTAACC
ACATTCACCACAGCCGAAGCCATTCCAATATTCGATCCAATGCCCAGGACCAGGAGCATGAAGAAGAACAGAACGGCGAA
CAGTTGGGGAAGGTACTTGAATTTGGCAATGGCCTCTGGATAGGAAATGAACGCTAGACCAGCTCCACCTTTGACAACCT
GCGAAATATCCTTGGTGTTGGTCTCAAAGGCCAGGTTGCCCAGAATTCCAAAGATGATGCAACCAGCCAGAATGGATGTA
AGCGAGTCTATAGTGGTGATTATTATCACATCTCTGGAAAGGAATGACACATAAAGATGATCTGAAACCAAAGAGGTTAC
TCAACTTACTTGTGCACATTCTTGTTGAAATCATTGAAGGAGGCGTACATGACCAGCGTTCCGAAGCAGATGGCCAGCGA
GAAGAACATCTGTGTGATGGCCGCGTACCACACGTGCGGATTGAGCAGCTGGGACCATTGGGGCTTCAGGAAGTACACAA
TTCCCTGCCAGGCACCTGGTAAAGTGACCGCCCGAATGAGCAGTACGATCATGATCACATAGGGAAACAGGGCCAGGAAA
TAGGAAGCTTTCCCAGAACTGCGAATGCCCTTTGACAAAATCGTGCCGATGATCACCCAAGTGGCCAGGAGACACAAGAC
CAGATCCCAACTGGGAGTACCCAGGCCATTATCGTCCAGCGATTCGGGCTCCCTCAGAACTGTTTGCCTGTATTCAGTAG
GTAGGTTAACTAAGGATTCTATATTCCGAAACGATCAAACAACACACTCACGTGAAAAACAGCTCGGCGGAGGAAACCCC
CTGCACAATGGATGAGTCATTGGCAGCTGTGGCTCCCGTCGCCACGCAACTTTTGCCCCATTCCACGAGGCAATATGTCC
AGGGCAGGACTTCACTGAAACTAGCCACCAAATATCTGATGGTCAAGGCCATAATGCAGGCGTAGTAGGTGGTGGCCAAG
GCGGTGGAATACACCTGACCATAGGCAATACCTAAACGAAATAAAGAAATTGCAACCATGTTGGGAATGTGCTCCATTCA
ACTCACTCACCCCTCATTATAGGTGCCATATCGAAGGCTCTGATGCAACCACGGCTCGAGAACTGACCAATGATGACCTC
CAGATAGTAAACCGGTCTGCCAATCAGCAGGAGCACAATCACGTAGGGTATGAGAAAGGCGCCACCGCCATT
          Other Products of this Gene
          Other Transcripts
          Name
          FlyBase ID
          Length (nt)
          CG42700-RC
          FBtr0302922
          2164
          CG42700-RD
          FBtr0302923
          2562
          CG42700-RE
          FBtr0332922
          1669
          CG42700-RF
          FBtr0332923
          2014
          CG42700-RG
          FBtr0332924
          2176
          CG42700-RH
          FBtr0345481
          2811
          CG42700-RI
          FBtr0345482
          2581
          Polypeptides
          Derived from THIS transcript
          Name
          FlyBase ID
          Length (aa)
          CG42700-PJ
          FBpp0311595
          370
          Derived from OTHER transcripts
          Name
          FlyBase ID
          Length (aa)
          CG42700-PC
          FBpp0292048
          370
          CG42700-PD
          FBpp0292049
          500
          CG42700-PE
          FBpp0305142
          361
          CG42700-PF
          FBpp0305143
          364
          CG42700-PG
          FBpp0305144
          415
          CG42700-PH
          FBpp0311593
          370
          CG42700-PI
          FBpp0311594
          509
          Comments

          Transcriptional initiation is supported by RAMPAGE TSS data (FBrf0220331).

          Extended 3' UTR based on RNA-Seq and/or EST data.

          External Crossreferences and Linkouts ( 1 )
          Crossreferences
          RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
          Synonyms and Secondary IDs (1)
          Reported As
          Symbol Synonym
          CG42700-RJ
          Secondary FlyBase IDs
            References (0)