FB2024_03 , released June 25, 2024
Transcript: Dmel\loco-RB
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General Information
Symbol
Dmel\loco-RB
Species
D. melanogaster
Annotation Symbol
CG5248-RB
FlyBase ID
FBtr0084275
Feature type
mRNA
Associated gene
Dmel\loco
Evidence Rank
Length (nt)
3993
Evidence Score
Genomic Location
Genomic Maps
cDNA Clones Consistent with the Transcript ( 26 )
cDNA Clones, Fully Sequenced
Exact Match
    Contained within the annotated transcript, internally consistent
      End(s) extend beyond the annotated transcript, internally consistent
        cDNA Clones, End Sequence Only (ESTs)
        Contained within the annotated transcript, internally consistent
        End(s) extend beyond the annotated transcript, internally consistent
          Sequence
          Sequence Downloader
          CGCAGTTCATACGATCACAACGCATTTGGTTAACAAGTGAAAACCAAAACTCAAATTAAAAAGAGTCAATAAGTTTAAAA
TTACATTGTAAACTGGGCCAATTAACTGGCACCCACAATAGCAAAGTGCAAGTGCGCGTCATGAACAATACAAATACCAC
TCGAGGCACTTGCTCCAGAATACCCATCGCAAGCAAGCAGGAACCAACCATCGCCAGCATGGTGGAACGGTTTGTCCAGT
CGCTGAGCCAACTGAATGATTCCGGCACCTTTGACAGCAGCTTCGAGATCAAGCGGATTCATCCTGGATCCTCGGCCGGT
TCCACGCCCAAACATGTCAGGCATCGCTGCCTCACGGAGCTGGATCGCGAACAGTTGACCCGGTTTGTGCAGGACTTCGA
AGAGCGACAGGCCAGCACACCGAAGGTCAAGTCCAAGATTAGCTCACCATACATATGCCGCAAGGCCAAGGAGTTTTATC
AAAGTGCCAGTGGCAGACGCAGTGCCTCACCGCAAATAACAATTGCACCGGAGACCGTGCAGGAGGAGAAAGTGTTGGTG
AATCCATTGCCTAGGAAATGCGCAGAGGCAGAGGACCTGATGCCACCACCCATGGCCATGGCACGTGTCCAGGCGGAACG
ACGCAGTTGCCGCAGTGCCTCCCGCGTGCTGCAGTTCTTCAGTTCGGCCACCAAAAGACGGAGTGGCAACCGAAAACTCA
GTGAGCCAGAGATGGAGGATAATCGCGCCGATTCCCCAGTGCTGATCAGAGTGACCAGGGATCGGGTGGAGGAGCAACTG
GGCTGTAGTCCACTGGCTGCATCTGGCGGAGAAGTACCCACCAGCTCCGAGGACGAGGAGGAGCACGACGACGGCATCAG
CTCGGCCAGCTCCAATCTCACTTCACAGTCGGGCAGCTCCAATAGCCGCAATCTCTCTCCGGACTCTTCCTTCGAGATGC
ACGCTCCACTCCTGCCCAGCTTCAAGGTCACGCCTCCACGGGCAGTTTGTCGTGTGGGAAAGAATGCCGCCTGCGAATTT
GCTCGTTTCCTGCGCGGCTCCTTTCACTCCAAGCGCGCATCGGTGACCACGCTGCGCAGATCCCTCAGCGATCCGGATGC
AGTGCAGCAGATGGACTTCAGCAAGCCGCCTCCGCTGCGCGACACCACCAACGTCATGCGAAACCGCGCTCTGCCCGCCA
ATGCCTCGCCCTTCCGCCGAGCCTGGGGACAGTCTTCCTTCCGCACTCCCCGTTCCGACAAGGTGGCCAAAGAGCAGCAG
CAGCTAGGACAGTCGTCGCCCGTAAGACGCACTGCCTCGATGAACGCCTCCGACAACGATATGTACATCAAGACGCTAAT
GCTGGACTCGGATCTGAAGTCATCGCGCAGCCAGCACCAGCTCAGTCTGCTGCAGGTGCCCAAGGTACTGACCACGCCTG
CACCGCCCTCCGCCATTACCGCGTCCGTTGCTGCAGAGGGTGCGGCTCAAGACCACGGCTGTCCCAGCAGTTGGGCCGGC
TCCTTTGAACGGATGCTACAGGATGCCGCTGGCATGCAGACGTTCTCGGAGTTTCTCAAGAAGGAGTTCTCCGCGGAGAA
CATATACTTCTGGACCGCCTGCGAACGTTATCGTCTGCTGGAATCTGAGGCGGATCGAGTGGCTCAGGCTCGCGAGATCT
TTGCCAAGCATTTGGCCAACAACAGCAGTGATCCCGTCAATGTGGACTCGCAGGCACGCAGCCTTACGGAGGAGAAGCTG
GCCGATGCCGCTCCGGACATCTTTGCGCCGGCACAGAAGCAGATTTTCAGCCTGATGAAGTTTGATAGCTATCAGCGTTT
CATTCGTTCGGACTTGTACAAAAGCTGCGTGGAGGCGGAGCAGAAGAACCAGCCACTGCCTTACAGCGGATTGGATCTAG
ACGAGCTGCTGAAGACAAATTTTCACTTAGGTGCCTTCTCCAAGCTCAAAAAATCGGCTAGCAATGCTGAGGATAGAAGA
CGGAAAAGTCTGCTTCCCTGGCACCGAAAGACGCGGAGTAAGTCCCGCGACCGCACCGAGATAATGGCTGACATGCAGCA
CGCGCTGATGCCGGCGCCACCAGTACCACAAAATGCCCCGCTCACCAGTGCCTCACTCAAACTTGTCTGCGGACAGAATT
CCTTGAGCGATCTGCACAGCTCTAGGTCATCTTTGTCCTCGTTTGATGCGGGCACAGCCACTGGCGGACAAGGAGCCAGT
ACGGAGAGCGTGTATTCGTTGTGCCGGGTGATCCTCACCGATGGAGCCACCACCATAGTGCAGACAAGACCTGGAGAAAC
AGTGGGAGAACTGGTCGAACGTTTGCTGGAAAAGAGGAACCTCGTGTATCCCTACTATGACATAGTGTTCCAGGGCAGCA
CCAAGTCGATCGATGTGCAGCAGCCATCGCAAATCCTGGCCGGTAAGGAGGTGGTAATCGAGCGCCGTGTGGCTTTCAAG
CTGGACCTGCCCGATCCGAAGGTGATCTCGGTGAAGAGTAAACCCAAGAAGCAACTGCACGAGGTGATCCGACCAATACT
CAGCAAGTACAACTACAAGATGGAGCAGGTGCAGGTGATCATGAGGGATACTCAAGTGCCAATCGACCTCAATCAGCCGG
TTACCATGGCCGATGGCCAGCGACTGCGCATCGTGATGGTGAATTCGGATTTTCAGGTAGGCGGCGGCAGTAGCATGCCG
CCGAAGCAAAGCAAACCTATGAAGCCACTGCCGCAGGGTCATTTGGATGAGCTAACGAACAAGGTGTTCAACGAGCTGCT
GGCCAGCAAGGCTGATGCAGCGGCCAGCGAGAAGTCGCGGCCTGTCGATCTGTGCTCCATGAAGTCCAACGAGGCGCCCT
CGGAGACATCATCGCTCTTTGAACGCATGCGGCGTCAGCAGCGCGATGGCGGCAACATTCCGGCTAGCAAGCTACCTAAG
CTCAAGAAGAAGTCCACTAGCAGCAGCCAACAATCCGAGGAGGCAGCGACAACTCAAGCAGTCGCGGATCCCAAGAAGCC
AATTATAGCCAAGCTAAAAGCGGGTGTGAAGCTGCAGGTGACGGAGCGAGTAGCCGAGCACCAAGATGAACTACTCGAGG
GCCTAAAGCGAGCACAGCTGGCACGACTGGAGGATCAGCGTGGCACCGAAATCAACTTCGACTTGCCTGATTTTCTGAAA
AACAAGGAGAATCTCAGCGCAGCTGTATCAAAGCTGCGCAAGGTGCGCGCCAGCTTGAGTCCCGTGAGCAAGGTACCCGC
CACGCCCACCGAAATTCCACAGCCGGCGCCACGTCTCTCCATCACACGTAGCCAACAGCCGGTGTCGCCCATGAAGGTGG
ATCAGGAGCCAGAGACTGACTTGCCTGCCGCGACGCAGGATCAAACGGAATTCGCAAAAGCGCCGCCACCGCTGCCGCCA
AAGCCAAAGGTGCTGCCCATCAAGCCTTCCAATTGGGGCGTGGCTCAGCCGACGGGCAACTATTGCAACAAGTACTCCCC
CAGCAAACAGGTGCCAACATCACCCAAAGAAGCCTCCAAACCTGGAACGTTTGCGAGCAAAATACCACTGGATCTGGGAC
GAAAGTCTCTGGAGGAGGCGGGCTCGCGGTGTGCATACCTCGACGAGCCCAGCAGCAGCTTTGTGTGATATAAGTGCGCC
CACGTACTTGAAATGGCTTTACTGATCTTGCTTGTATATATATGTGCACTATTTATTGATACTTTATATCCTATTCCCTA
TTCTCTAAATGTCCAAACAATCCATGACGAGCTTTTGTATGTTATCTACTGAGTGATCGCCTGTATTTATAATAACTAGC
AACAATAAGCATTAGCTTTACTACATTTTGAATAAATATATCAAAAGTAATAAGTATACGTATTATTGAATAATATATGT
TCCTAGGTGGCTTACCTACCTAAGGTGGTTTACAAGAAAATTGAGTCTACATTTTCCATTCATCTTAGAGGGT
          Other Products of this Gene
          Other Transcripts
          Name
          FlyBase ID
          Length (nt)
          loco-RC
          FBtr0084276
          3160
          loco-RD
          FBtr0084273
          5330
          loco-RF
          FBtr0304669
          3133
          loco-RH
          FBtr0309249
          3519
          Polypeptides
          Derived from THIS transcript
          Name
          FlyBase ID
          Length (aa)
          loco-PB
          FBpp0083668
          1175
          Derived from OTHER transcripts
          Name
          FlyBase ID
          Length (aa)
          loco-PC
          FBpp0083669
          829
          loco-PD
          FBpp0083666
          1541
          loco-PF
          FBpp0293211
          782
          loco-PH
          FBpp0301188
          846
          Comments

          mRNA structure partially determined in FBrf0108191.

          Transcript terminates at site supported by polyadenylated cDNA.

          External Crossreferences and Linkouts ( 1 )
          Crossreferences
          RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
          Synonyms and Secondary IDs (3)
          Reported As
          Symbol Synonym
          CG5248-RB
          (FlyBase, 1996-)
          loco-RB
          (FlyBase, 1996-)
          loco+R3.9
          (FlyBase, 1996-)
          Secondary FlyBase IDs
          • FBtr0006056
          References (3)