FB2024_03 , released June 25, 2024
Physical Interaction report
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General Information
Interaction Type
Interacting Genes
FlyBase ID
FBig0000108822
Interaction Network
Interactions Browser links
Dfd network
exd network
esyN Network Diagram
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Protein
RNA
Selected Interactor(s)
Common Interactor(s)
Reported Interactions
FBrf0100049-2.EMSA.A
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
Dfd 

Dfd

neutral component
Dfd 

Dfd

neutral component
Dfd 

Dfd

neutral component
exd 

Exd

neutral component
exd 

Exd

neutral component
exd 

Exd

neutral component
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; proteins produced as a recombinant fusion proteins in bacterial system.

Dfd and exd bind DNA cooperatively; exd does not bind DNA on its own; alone, Dfd binds the probe tested only weakly.

Various combinations of Dfd and exd were mixed with [32]P labeled DNA. DNA-protein complexes observed by EMSA were used to deduce protein-protein interactions.

FBrf0106039-1.EMSA.A
Reference
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
Dfd 

Dfd

neutral component
Dfd 

Dfd

neutral component
Dfd 

Dfd

neutral component
exd 

Exd

neutral component
exd 

Exd

neutral component
exd 

Exd

neutral component
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; proteins produced as a recombinant fusion proteins in bacterial system.

Dfd and exd form heterodimers that bind DNA; exd alone does not bind DNA; Dfd alone binds DNA but less efficiently than the Dfd-exd heterodimer.

Various combinations of Dfd and exd were mixed with [32]P labeled DNA. DNA-protein complexes observed by EMSA were used to deduce protein-protein interactions.

FBrf0211269-1.EMSA.A
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
Dfd 

Dfd

neutral component

His tag

Dfd 

Dfd

neutral component

His tag

Dfd 
Dfd 

Dfd

neutral component

His tag

Dfd 
exd 

exd

neutral component

His tag

exd 

exd

neutral component

His tag

exd 

exd

neutral component

His tag

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Dfd 
YPWM motif residues Y344 and P345
mutation disrupting interaction
aa 344-345

Y344A, P345A, coordinates relative to Dfd-PA

Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; proteins produced as a recombinant fusion proteins in bacterial system.

The exd-hth heterodimer and Dfd bind cooperatively to DNA; exd-hth alone does not bind to the DNA probe tested, and Dfd alone binds only weakly.

Dfd was mixed with a preformed exd-hth heterodimer ("exd-HM") and [32]P labeled DNA containing the modC Dfd autoregulatory element. DNA-protein complexes observed by EMSA were used to deduce protein-protein interactions.

FBrf0241917-2.NMR
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
Dfd 

DFD

neutral component
Dfd 

DFD

neutral component
Dfd 
Dfd 

DFD

neutral component
Dfd 
exd 

EXD

neutral component
exd 
exd 

EXD

neutral component
exd 

EXD

neutral component
exd 
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Dfd 
homeobox domain
sufficient binding region
aa 337-426
exd 
homeobox domain
sufficient binding region
aa 238-300
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; proteins produced as a recombinant fusion proteins in bacterial system.

Kd = 1.3mM

FBrf0243160-2.EMSA.A
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
exd 

Exd

neutral component

His tag

exd 

Exd

neutral component

His tag

exd 

Exd

neutral component

His tag

Dfd 

Dfd

neutral component

His tag

Dfd 

Dfd

neutral component

His tag

Dfd 

Dfd

neutral component

His tag

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

exd does not bind DNA in the absence of Dfd.

Interaction in vitro; proteins produced as a recombinant fusion proteins in bacterial system.

Various combinations of exd and Dfd were mixed with [32]P labeled DNA. DNA-protein complexes observed by EMSA were used to deduce protein-protein interactions.

External Crossreferences and Linkouts ( 1 )
Linkouts
MIST - An integrated Molecular Interaction Database
References (5)