FB2024_03 , released June 25, 2024
Physical Interaction report
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General Information
Interaction Type
Interacting Genes
FlyBase ID
FBig0000108661
Interaction Network
Interactions Browser links
exd network
lab network
esyN Network Diagram
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Protein
RNA
Selected Interactor(s)
Common Interactor(s)
Reported Interactions
FBrf0100049-1.EMSA.A
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
lab 

Lab

neutral component
lab 

Lab

neutral component
lab 

Lab

neutral component
exd 

Exd

neutral component
exd 

Exd

neutral component
exd 

Exd

neutral component
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

lab and exd bind DNA cooperatively; neither binds DNA on its own in this assay.

Interaction in vitro; proteins produced as a recombinant fusion proteins in bacterial system.

Various combinations of lab and exd were mixed with [32]P labeled DNA. DNA-protein complexes observed by EMSA were used to deduce protein-protein interactions.

FBrf0123181-3.EMSA.A
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
lab 

Labial

neutral component

His tag

lab 

Labial

neutral component

His tag

lab 

Labial

neutral component

His tag

exd 

Exd

neutral component

His tag

exd 

Exd

neutral component

His tag

exd 

Exd

neutral component

His tag

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; proteins produced as a recombinant fusion protein in bacterial system.

exd stimulates strong binding of lab DNA by lab. Alone, neither lab nor exd binds to lab DNA.

Various combinations of hth, lab and exd proteins were mixed with [32]P labeled lab DNA. DNA-protein complexes observed by EMSA were used to deduce protein-protein interactions.

FBrf0218732-1.BiFC.FM
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
exd 

Exd

bait

Venus tag, N-terminal fragment

exd 
lab 

Lab

prey

Venus tag, C-terminal fragment

lab 
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
exd 
HD domain residue 51
mutation decreasing interaction
aa 51

N51A

lab 
HX domain
mutation decreasing interaction
unspecified

YKWM to YAAA

Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was embryos of transgenic fly line; bait produced from tagged transgenic construct; prey produced from tagged transgenic construct.

FBrf0218732-8.EMSA.A
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
exd 

Exd

neutral component
exd 

Exd

neutral component
exd 
exd 

Exd

neutral component
exd 
lab 

Lab

neutral component
lab 
lab 

Lab

neutral component
lab 

Lab

neutral component
lab 
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
lab 
HX domain
mutation decreasing interaction
unspecified

YKWM to YAAA

exd 
HD domain residue 51
mutation disrupting interaction
aa 51

N51A

Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; proteins produced by in vitro transcription/translation.

exd, hth and lab, in various combinations, were mixed with [32]P labeled DNA. DNA-protein complexes observed by EMSA, corresponding to lab-exd heterodimers and lab-exd-hth heterotrimers, were used to deduce protein-protein interactions.

FBrf0219230-1.EMSA.A
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
exd 

exd

neutral component

His tag

exd 

exd

neutral component

His tag

exd 

exd

neutral component

His tag

lab 

lab

neutral component

His tag

lab 

lab

neutral component

His tag

lab 

lab

neutral component

His tag

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; proteins produced as a recombinant fusion protein in bacterial system.

exd and lab form heterodimers that bind DNA. Neither binds DNA alone.

Various combinations of hth, lab and exd proteins were mixed with [32]P labeled DNA. DNA-protein complexes observed by EMSA were used to deduce protein-protein interactions.

FBrf0243160-1.EMSA.A
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
exd 

Exd

neutral component

His tag

exd 

Exd

neutral component

His tag

exd 

Exd

neutral component

His tag

lab 

Lab

neutral component

His tag

lab 

Lab

neutral component

His tag

lab 

Lab

neutral component

His tag

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

exd and lab bind DNA cooperatively; neither binds DNA on its own in this assay.

Interaction in vitro; proteins produced as a recombinant fusion proteins in bacterial system.

Various combinations of exd and lab were mixed with [32]P labeled DNA. DNA-protein complexes observed by EMSA were used to deduce protein-protein interactions.

External Crossreferences and Linkouts ( 1 )
Linkouts
MIST - An integrated Molecular Interaction Database
References (5)