BEST:GH02216 , vir1
Please see the JBrowse view of Dmel\vir-1 for information on other features
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AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Some regions with low pLDDT may be unstructured in isolation.
Gene model includes transcripts encoding non-overlapping portions of the full CDS.
Annotated transcripts do not represent all supported alternative splices within 5' UTR.
Low-frequency RNA-Seq exon junction(s) not annotated.
Annotated transcripts do not represent all possible combinations of alternative exons and/or alternative promoters.
Gene model reviewed during 5.47
Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\vir-1 using the Feature Mapper tool.
The testis specificity index was calculated from modENCODE tissue expression data by Vedelek et al., 2018 to indicate the degree of testis enrichment compared to other tissues. Scores range from -2.52 (underrepresented) to 5.2 (very high testis bias).
Comment: maternally deposited
Comment: reported as posterior spiracle specific anlage
Comment: AMG
Expression is observed in the anterior midline glial cells.
JBrowse - Visual display of RNA-Seq signals
View Dmel\vir-1 in JBrowse2-46
2-40.9
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see JBrowse for alignment of the cDNAs and ESTs to the gene model.
For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.
Nonsense-mediated mRNA decay (NMD) down-regulates a distinct splice isoform(s) of this gene.
Source for merge of: BEST:GH02216 CG31764
Source for merge of: CG15493 CG5453
Annotations CG15493 and CG5453 merged as CG31764 in release 3 of the genome annotation.
Source for merge of BEST:GH02216 CG31764 was a shared cDNA ( date:030206 ).
Source for identity of: vir-1 CG31764