FB2024_03 , released June 25, 2024
Clone: Dmel\SD17880
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General Information
Symbol
Dmel\SD17880
Species
D. melanogaster
Name
SD17880
FlyBase ID
FBcl0286824
Feature type
Computed gene(s)
 
Collection Status
BDGP
Known Problems
none
FlyBase assessment
    Library
    SD_cDNA
    • SD cDNA library of D. melanogaster, Schneider's Line-2 cells.
    Strain
      Vector
      Tissue Source
      Sequence Data of the Insert
      Full Length Sequence
      Total bases
      4,774
      NCBI
      Full Length sequence dataSequence Downloader
      ACAGGCAGTTTTATGGTGACACCAAAATAAGAATTAACTGGTCATCTATGGAACAACATTGGAGTTGCTGGACCTACACA
      TAAATTTATCACTTGGTCAAACAACAAGGAAGAGCCTATTAAAGAAATTGAACTAATACCTGATTTTGCTTGGGTAGCTA
      TTAATGTGCCACTGAACGGTGTTTTTATTAAAATGATTGAAATTGAGCTAAAAATAAAATCTTGAAGCTTAGCTGGTGGC
      ATTCTCCTGTTGATATGCATTATGTAGCGACAGAATCAGTGCAACCAAAAAAAAGTGATAAAGTACCGAGCAATAAAATT
      AAAAAAGTTGAGAACAATAATACTTTAGTTAATGGTTGTAGTAAAACTTCAGCAAGATCTGTTCCATTACTCAAATATAA
      TCGTCCAGACCAGGATGGGGACAGCGAAGAAAACATAACAAGCGTTCTTGAGCCAAACGTTGATGAAATCTATTCTAAAG
      ACTCAGAACGGCTTGTGGATGATTCAAAACCATGTATTGGACTATTAAATCCAGATCAGGAGGATCAAATGAAAGTATGC
      GGTTATCGACGTTCTCTTATGCGAACTGGTTTTTGTTGGGCATGCATCTTCTTAACTGGAGGTCTGTTGCGCCTCGTGTT
      ACATTGGTGGCGTCATTTATATTTATATGCCACTTGCTCTCAATGTTCATTGGAGGAGGCAGAACAGGTTTTGGTAACAG
      AGGATTATCAAGGAAAGCACAAAATGTACCATGTAAAGCAAATTCAAGTCCTAACGTCGAGCAACCTTAAGACACTTTTG
      GAAAAGGAACAGCAATCCATAGAAAGAACTCATATAGAATGCGATCATGTAGAAAACGTCCTTCAACTGTCAGTTCATTT
      TACCTCGGCCCAATTCAAAAAATGCTCATCAATACGAATTTTTCGCTGCAAGCAATTGGTTTATGCTTGGAACAATAATA
      CAAATAGATTTCAAAGGATAAATGGACTCGACCTAAATATTCCTTGTTCATATTATCACCAACAGCGTGGATTACCTGTA
      CATGAACAGATTTCAAGGCGAATTGTTTTCGGAGATAATGAGATAACTGTACCATTGCGAGATTTCAAGACATTGCTGTT
      CTTAGAAGTACTTAATCCTTTTTACGTTTTTCAATTATTTTCTGTAATTCTTTGGTTTACATATGATTACTATTACTATG
      CTTGCGTAATACTCTTGATGTCAGTTTTTGGTATAACAGTGTCTGTTTTACAAACGAAAAAGAATCAGGATGTGCTCCAA
      AAAACAGTATATAACACTGGTAATGCTTGGGTTGTTGATCATAAAGGACTGTCTAAAGAGCTTCCAACGCGAGCGATAGT
      ACCTGGGGACATCATTGAAATACCCTCATCAGGGTGTACGCTGCATTGCGATGCAATCTTAATATCAGGAAACTGCATTC
      TAGATGAGTCTATGCTTACTGGTGAAAGTGTGCCAGTGACCAAAACTCCTCTACCGTCGAAACGTGACATGATTTTTGAT
      AAAACAGAGCATGCCAGACATACACTTTTTTGTGGCACAAAGGTTATTCAGACTCGTTATATTGGCTCCAAAAAAGTATT
      AGCATTTGTAATAAACACTGGAAACATAACGGCAAAAGGAGAACTTATACGTTCTATTCTTTATCCCCCCCCTGTGGACT
      ACAAGTTTGAACAAGATTCGTACAAATTTATCCAGTTTCTGGCCATAATAGCATGTGTAGGATTTATTTATACGCTTGTA
      ACTAAAATCTTGCGTGGAACGGATCCTGTGAAAATAGCAGTTGAATCACTTGACCTTATCACAATTGTAGTCCCACCTGC
      ACTTCCAGCGGCAATGACAGTCGGTCGATTTTATGCACAAAAGCGGCTAAAGACTAGTGAAATATTTTGCATATCTCCTA
      GGTCTATAAATGTGGCAGGAAGCATAAATTGTTGTTGCTTTGACAAGACTGGTACTCTTACGGAAGATGGACTTGACATG
      TGGGGTGTTGTGCCCAAATCATCGACTAATCAATTTCAAATTCCCTTAAAAAGTGTTGATCGATTGCCATTCGATCACTT
      CCTTTTCGGTATGGTAACGTGTCATTCTATAACAATATTGAACGGCAGAATGATGGGCGACCCATTGGATTTAAAAATGT
      TCGAGTCTACAGGATGGGAACTAGAAGATTCAAATAACATACCTGACACTGAAAAATATGGTATTCTTTATCCAACAATT
      TTAAGACAGCCAAGAGGTGGCCTTTCCGGTATGGCTGAAACCGAATCTGGATCTAAGAATGAAATTAAGCGGCAATCCTC
      AGTAGACGATTTACTAGCCACTGTTGGAATCTCGCCATCCCAAAAGAATTTTGATCATGGTATCGTTCGAGAATTTCCAT
      TTACTTCAGCTCTTCAGCGGATGTCTGTTGTTACTCGTTGTCTTAGTGACCAAGTATTTAATGTTTACTGCAAAGGTTCT
      CCCGAGATGTTGAAAAAACTGTGTAAACCACAAAGTTTACCAGATAATTATTCGCAACAACTATCGGAATTCGCAAAAAA
      AGGATACCGAATTATTGCCATTGCATTTAAAGCCCTTTCCCACAAGATGAACTATACAAAAGTACAGCGTTTATCTCGCG
      AAGAGGTTGAAAACAACATGGAATTTTTGGGTTTTGTTATACTTGAGAATCGCCTTAAACCAGATACTACTAAAGTAATA
      AATGCGCTTAACGCAGCCAAAATTCGAACTATAATGATAACAGGCGATAACATTTTAACTGCAATAAGCGTTGCTCGGGA
      TTGTGGCATAGTAAGTCCCTCTCAATCAGTTATAACAGTGCATGCAGATCCAATTGGTGACAGTGCAAACATTCAAACTA
      ATACCGGTACAGAGTGTAATTTTGATAACAGTTCAGATAAACACTACAAGTTGCACTACACTTTAGATTTGGGTAGCAAG
      ACATCTCGGGCATATCTGTTTAAATCATGTTTTAACAGTAACCTTTTTGACCCTGAAACACCTGAATTCACGGCCCAAGT
      TGGAAAAACTATTTTTCATATGGAGTCGACGAATTCATTAGTTAACGAATCGACTTCTAGTTACGCAGAAAGTGGTTTGC
      CAACAAGCGATAGTTTGGCCAGTGTAAAAACTATAGACACTTGGACCCACAATGATGCTGAGCTTGGAATAAAACACACA
      CCAGACGAAAGCTGGCGGCGGCAAGAATGCATATTTGCAATGGATGGTAAAACTTGGCAAATTGTAAAAGATTACTTTCC
      AAGAAATGGAAATTCTTTTGACACGGGGTTCTATTTACGCCCGAATGTCACCCGATCAGAAACAGGCACTAGTTATAGAA
      CTTCAAAACTTGGACTATTGCGTTGCCATGTGCGGTGATGGAGCCAATGACTGTGGTGCACTGAAGGTGGCTCACGCTGG
      TATTTCCTTAAGCGAGACTGAAGCATCTATAGCATCGCCATTTACTTCACGAAATCCCACAATTTCGGCGGTTTTAAAAG
      TTATTAAGGAAGGACGCGCTGCATTGGTCACATCGTTTGGTATTTTCAAGTATATGGCAGCCTATTCGCTGGTTCAGTTT
      ATATCTGTTATGATTTTGTATTCCATCGACTCCAATTTGACGGACAAGCAGTATCTATATGTCGATCTTGGACTTATATC
      AATTTTTGCCTTCTTTTTTGGTAAAACTGAATCATTTGATGGAATGCTGGTGGAACAAGTGCCGCTTAGTTCATTAATAT
      CCTCTACGCCATTAGCATCCCTTTTACTACATCTTACTGTTGTAACAGCATTTCAGGTGACTTGTTGGGTTCATCTGCAT
      CAACAGCCCTGGTTTAAAGCTTTCGAGCCTGCGGATGAAGATCATTTAGGTTGCTTTGAAAACTATACAATGTTCTGCAT
      ATCTAGTTTCCAGTATATAATTCTAGCTTTTGTTTTCTCAAAGGGAGCACCGTACAGAAAACCACTGTGGTCGAATTGGC
      CACTGTGCTTAGCATTTATTGTAAATTTGTGCATTATTGTATATTTGGTTCTTTACCCCAGCGATTGGGTAGCATCCTTT
      TTTCAGCTTATTGTACCTCCTACAATGAGATTTCGATACGTTATGCTTGCATACGGAGCAGCATCATTTATATGTCATAT
      TTTTGTCGAGTCTTTCTTGGTTGAATATCTAGTGTTCAAAAAATACCAAGTAAAGCGAGAGAAAAACTGGGTCACATCGA
      AGCAAAAATACATGCGTCTAGAGCATGATATATCAAATATAAAAAACTGGCCACCTATAACTGAAGTTTATGAACCGAAT
      AATTTAATAGACTGCGAAACTGAACAGCCCACATATGTAAGTTTGCACGCTGAACAAAACCATGATACGCAGCTTGGAAA
      GTTTCCGGGATTTTGTTAGAAATAATCCACGTCGAATCCTTTGTAAATTGTACTGTAACCTAAGGAATTACTTTTAGGAA
      TTTCCATTATTAATACAGTAGAAAATGTAGGCAAAATTATTTAGTTCCTATTTAGTTTTTTTAGTAATCTTAGTATTTCT
      AATTGTACTTACATCAAAGATAACTTTGTATTAGCTATGAACACTTTTGTCTTTCTATGTTTAAAACGGCGTTGTTTCTT
      GATTATAATTAAGTGTTTGATGTTTATATACATAAGCAAAAATTCATATAGGCTGTATAATAAGCATTGGAGTAACTTTA
      ATTCATAAAATAAAAATGAATAATCACAATAAAAAAAAAAAAAAAAAAAAAAAA
      
      Library Information (1)
      Library: SD_cDNA
      Description

      Cloned cDNAs prepared from polyadenylated RNA isolated from cultured cells; cell line used was not derived the iso-1 sequenced strain.

      Sample preparation

      For the SD cDNA library, Schneider L2 cells were collected.

      Protocol

      RNA was poly(A)+ selected once. oligo(dT) primed with XhoI site at end of primer for first strand synthesis; EcoRI adapter on 5' ends of clones; size fractionated on Sephacryl S-500--approximately 1-6kb. cDNA directionally cloned into EcoRI/XhoI-digested pOT2 plasmid. ~300,000 colonies were plated out and a mass plasmid DNA prep was done using Qiagen Plasmids containing the cDNA inserts were size selected on Sephacryl S-500 column in order to exclude plasmids with no insert. Early elutions were collected and transformed into DH5 alpha strain (Gibco/BRL).

      Comment
      Reported As
      Symbol Synonyms
      SD
      SD_cDNA
      References (1)
      Review (1)
      Rubin et al., 2000, Science 287(5461): 2222--2224
      A Drosophila complementary DNA resource. [FBrf0127297]
      External Crossreferences and Linkouts ( 1 )
      Linkouts
      DGRC - Stock center for Drosophila cDNAs, vectors, and cell lines
      Synonyms and Secondary IDs (0)
      Reported As
      Symbol Synonym
      Secondary FlyBase IDs
        References (0)