FB2024_03 , released June 25, 2024
Allele: Dmel\whd80k17
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General Information
Symbol
Dmel\whd80k17
Species
D. melanogaster
Name
hybrid dysgenesis
FlyBase ID
FBal0018248
Feature type
allele
Associated gene
Associated Insertion(s)
Carried in Construct
Also Known As
whd
Key Links
Genomic Maps

Nature of the Allele
Progenitor genotype
Associated Insertion(s)
Cytology
Description

P-element insertion into exon 6.

Small P-element insertion (629bp) in one exon.

P-element insertion in 3' coding region.

P-element insertion in one exon.

Insertion of 629bp P-element into the coding region of w.

Insertion of a 0.6 kb P-element at map position -2.1 relative to the transcription start site of w.

P-element is deleted (from position 139 to 2416). Same insertion point as for whash-6 and whd81b9. Same insertion orientation as whash-6 but opposite to that of whash-12 and whd81b9.

P-element insertion map site (kb): -2.03; Origin = insertion of wa copia; '-' values to left (telomere) end; '+' values to right (centromere) end.

Mutations Mapped to the Genome
Associated Sequence Data
DNA sequence
Protein sequence
 
Expression Data
Reporter Expression
Additional Information
Statement
Reference
 
Marker for
Reflects expression of
Reporter construct used in assay
Human Disease Associations
Disease Ontology (DO) Annotations
Models Based on Experimental Evidence ( 0 )
Disease
Evidence
References
Modifiers Based on Experimental Evidence ( 0 )
Disease
Interaction
References
Comments on Models/Modifiers Based on Experimental Evidence ( 0 )
 
Disease-implicated variant(s)
 
Phenotypic Data
Phenotypic Class
Phenotype Manifest In
Detailed Description
Statement
Reference

Eye colour: bleached white in homozygotes.

Eye colour: white.

External Data
Interactions
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Phenotypic Class
Phenotype Manifest In
Additional Comments
Genetic Interactions
Statement
Reference
Xenogenetic Interactions
Statement
Reference
Complementation and Rescue Data
Comments
Images (0)
Mutant
Wild-type
Stocks (1)
Notes on Origin
Discoverer

Kidwell.

Comments
Comments

Unstable, reverts to wild-type by P-element excision.

Generated using the Harwich strain.

Reversion rate in males is 0.0015 +/- 0.0007. Reversion rate is increased in combination with wa and w1118. High-frequency reversion does not occur when whd80k17 is placed opposite a deletion overlapping the insertion point, or when whd80k17 is homozygous. Reversion frequency of whd80k17 is reduced in In(1)scS1Lsc8R+S (which carries wa), in comparison to wa, probably because of reduction in pairing between the homologous chromosomes. The presence of an ectopic w gene, P{CaSpeR-C47.1}17C, stimulates reversion of whd80k17.

Conversion events have been identified, transposase induced replacement of the inserted P-element with P{walter}.

Repair of the P-element induced break can be achieved by precise excision of the insertion and revertants obtained through oligonucleotide directed repair.

81 revertants were isolated as part of study of repair of double stranded DNA breaks.

In the presence of transposase the P-element sequence can be converted at a high frequency with DNA from a derivative allele (members of the "whd-F" and "whd-D" group).

Targetted transposition, one P-element exactly replaces another P-element, has been studied at the w locus. The donor transposon, P{walLy}, located in trans on the second chromosome, has been recovered in both orientations. Targetted transposition occurs at approximately the same rate as targetted gene conversion.

Precise excision of the P-element can be found at a rate hundreds of times greater if a homologous w sequence is present which does not contain the same P-element insertion. No precise loss is seen when no homologous w sequence or a w allele containing a deletion covering the insertion site is present on the homologous chromosome. This evidence suggests P-elements transpose via a cut and paste mechanism.

Template-dependent transposase mediated gene conversion of whd80k17 gives rise to four different classes of event. The most common are conversions external to the whd80k17 P-element and gene conversion internal to the P-element. Right-end and left-end duplications are also observed. These gene conversion experiments suggest that P-element excision occurs by a staggered cut that leaves at least 33bp of single-stranded sequence, and demonstrate that an efficient homology search is conducted by the broken end with less than 31 nucleotides.

External Crossreferences and Linkouts ( 2 )
Crossreferences
GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.
Synonyms and Secondary IDs (3)
References (29)