FlyBase Aberration Report: Dmel\Df(2R)nap9

General Information

Symbol

Df(2R)nap9

Species

D. melanogaster

Name

FlyBase ID

FBab0002190

Feature type

chromosomal_deletion

Also Known As

Df(2R)nap⁹

Computed Breakpoints include

42A1-42A2;42E6-42F1

Features within 42A1--42F1

Genomic Maps

JBrowse

Sequence coordinates

2R:5,798,246..5,852,960 (Df(2R)nap9:bk1)

(Yamamoto et al., 2009.2.25)

2R:7,000,231..7,009,943 (Df(2R)nap9:bk2)

(Yamamoto et al., 2009.2.25)

Member of large scale dataset(s)

Nature of Aberration

Cytological Order

Progenitor

Mutagen

Class of aberration (relative to wild type)

chromosomal_deletion

(FlyBase, 2007)

Class of aberration (relative to progenitor)

chromosomal_deletion

(Gellon et al., 1997, Kreber, 1994.3.17, Cohen et al., 1992)

Breakpoints

42A1-42A2;42E5-42E7

(Cohen et al., 1992)

42A1-42A2;42E5-42F1

(Kreber, 1994.3.17)

42A1-42A2;42E6-42F1

(Gellon et al., 1997)

Causes alleles

Carries alleles

Transposon Insertions

Formalized genetic data

ap << bk1 << Eb1 << bk2

Genetic mapping information

Comments

Comments on Cytology

The left Df(2R)nap9 breakpoint lies within dpr12 or Or42b or in the region between dpr12 and Or42b, and lies in the range 2R:1685751..1740465 (R5) (predicted cytology: 41F11-42A1).

(Yamamoto et al., 2009.2.25)

The right Df(2R)nap9 breakpoint likely lies within Tsp42Ec or Tsp42Ed or in the region between these genes, and lies in the range 2R:2887736..2897448 (R5) (predicted cytology: 42B2).

(Yamamoto et al., 2009.2.25)

Left limit of break 1 from polytene analysis (FBrf0075275) Right limit of break 1 from inclusion of Src42A (FBrf0102064) Left limit of break 2 from polytene analysis (FBrf0098246) Right limit of break 2 from polytene analysis (FBrf0075275)

Sequence Crossreferences

DDBJ / EMBL / GenBank

DNA sequence

Protein sequence

Gene Deletion and Duplication Data

Genes Deleted / Disrupted

Complementation Data

Completely deleted / disrupted

BubR1

(Malmanche et al., 2007)

E(ls)1

(Pepple et al., 2007)

Eb1

(Brumby et al., 2004)

EcR

(Gellon et al., 1997)

l(2)42Aa

(Roote and Ashburner, 2005.6)

l(2)42Ab

(Roote and Ashburner, 2005.6)

l(2)42Ac

(Roote and Ashburner, 2005.6)

Mccc2

(BDGP Project Members, 1994-1999)

Src42A

(Lu and Li, 1999, Zhang et al., 1999, Lu, 1998.3.10)

Tdc1

(Cole et al., 2005)

Tdc2

(Cole et al., 2005)

Partially deleted / disrupted

Molecular Data

Completely deleted

Partially deleted

Genes NOT Deleted / Disrupted

Complementation Data

(Cohen et al., 1992)

S(CycE^JP)2.4

(Brumby et al., 2004)

S(CycE^JP)2.10

(Brumby et al., 2004)

Molecular Data

Genes Duplicated

Complementation Data

Completely duplicated

Partially duplicated

Molecular Data

Completely duplicated

Partially duplicated

Genes NOT Duplicated

Complementation Data

Molecular Data

Affected Genes Inferred by Location

Related Comments

Phenotypic Data

In combination with other aberrations

NOT in combination with other aberrations

The Df(2R)nap9 chromosome does not act as a dominant suppressor of telomeric silencing (assayed using the effect of the chromosome on the eye colour phenotype of flies carrying "P{w^var}KR3-2", a stable "brown-red" variant of the P{3'WP-2,w^var}2Lt insertion).

(Mason et al., 2004)

No second site non-complementing phenotype with zip^Ebr and zip^mhc-c6.1.

(Halsell and Kiehart, 1998)

Stocks (3)

Bloomington

1007

Df(2R)nap9/Dp(2;2)BG, In(2LR)Gla, wg^Gla-1

Kyoto

106701

Df(2R)nap9/In(2LR)Gla, Dp(2;2)BG, wg^Gla-1

103280

Df(2R)nap9 / In(2LR)Gla, Dp(2;2)BG, wg^Gla-1

Notes on Origin

Discoverer

Balancer / Genotype Variants of the Aberration

Separable Components

Other Comments

Synonyms and Secondary IDs (4)

Reported As

Symbol Synonym

Df(2R)^nap9

(Muraoka et al., 2018)

Df(2R)nap9

(Tan et al., 2020, Galindo et al., 2014, Butler et al., 2012, Fernandes and Rao, 2011, Yamamoto et al., 2009.2.25, Kucherenko et al., 2008, Baum et al., 2007, Malmanche et al., 2007, Pepple et al., 2007, Anderson et al., 2006, Huang et al., 2004)

Df(2R)nap^9-2

(Cohen et al., 1992)

Df(2R)nap⁹

(Funakoshi et al., 2010, Lu and Li, 1999, Zhang et al., 1999, Kreber, 1994.3.17, Kernan et al., 1991, Kuroda et al., 1991)

Name Synonyms

Secondary FlyBase IDs

FBab0022275

References (35)

Report Sections

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