FlyBase Gene Report: Dmel\CCY

General Information

Symbol

Dmel\CCY

Species

D. melanogaster

Name

Coiled-Coils Y

Annotation Symbol

CG45930

Feature Type

protein_coding_gene

FlyBase ID

FBgn0267592

Gene Model Status

Current

Stock Availability

2 publicly available

Gene Summary

Contribute a Gene Snapshot for this gene.

All Summaries

Alliance
Auto summary
Interactive Fly

Key Links

Genomic Location

Cytogenetic map

Sequence location

Y:3,649,996..3,666,928 [+]

Recombination map

Y-

RefSeq locus

NC_024512 REGION:3649996..3666928

Sequence

Get Decorated FASTA

Genomic Maps

JBrowse

Other Genome Views

The following external sites may use different assemblies or annotations than FlyBase.

NCBI

UCSC

Ensembl

Function

Gene Ontology (GO) Annotations (0 terms)

Molecular Function (1 term)

Terms Based on Experimental Evidence (0 terms)

Terms Based on Predictions or Assertions (0 terms)

Biological Process (1 term)

Terms Based on Experimental Evidence (0 terms)

Terms Based on Predictions or Assertions (0 terms)

Cellular Component (1 term)

Terms Based on Experimental Evidence (0 terms)

Terms Based on Predictions or Assertions (0 terms)

Gene Group (FlyBase)

Protein Family (UniProt)

Protein Signatures (InterPro)

Summaries

Gene Model and Products

Number of Transcripts

Number of Unique Polypeptides

Please see the JBrowse view of Dmel\CCY for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)

Isoform displayed:

Pfam protein domains

InterPro name

classification

start

end

Protein Domains (via SMART)

Isoform displayed:

SMART protein domains

InterPro name

classification

start

end

Structure

Protein 3D structure (Predicted by AlphaFold) (AlphaFold entry A0A0S0X8W1)

If you don't see a structure in the viewer, refresh your browser.

Model Confidence:

Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)

AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Some regions with low pLDDT may be unstructured in isolation.

Experimentally Determined Structures

Crossreferences

Comments on Gene Model

Gene model reviewed during 6.02

Gene model reviewed during 6.03

Sequence Ontology: Class of Gene

gene

nuclear_gene

(FlyBase Genome Annotators, 2009, Drosophila Heterochromatin Genome Project, 2007)

protein_coding_gene

(FlyBase Genome Annotators, 2009, Drosophila Heterochromatin Genome Project, 2007)

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Assoc. CDS (aa)

CCY-RB

FBtr0347413

NM_001316660

4002

1333

Additional Transcript Data and Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

UniProt

RefSeq ID

GenBank

CCY-PB

FBpp0312563

148.4

1333

5.49

A0A0S0X8W1

NP_001303589

ALI51689

Polypeptides with Identical Sequences

There is only one protein coding transcript and one polypeptide associated with this gene

Additional Polypeptide Data and Comments

Reported size (kDa)

Comments

External Data

Crossreferences

Linkouts

Sequences Consistent with the Gene Model

Nucleotide / Polypeptide Records

UniProt

Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\CCY using the Feature Mapper tool.

External Data

Crossreferences

Linkouts

Expression Data

Testis-specificity index

The testis specificity index was calculated from modENCODE tissue expression data by Vedelek et al., 2018 to indicate the degree of testis enrichment compared to other tissues. Scores range from -2.52 (underrepresented) to 5.2 (very high testis bias).

3.17

Transcript Expression

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Polypeptide Expression

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Evidence

References

Expression Deduced from Reporters

High-Throughput Expression Data

Associated Tools

JBrowse - Visual display of RNA-Seq signals

View Dmel\CCY in JBrowse

RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region

View exonic expression by developmental stage for Dmel\CCY

View exonic expression by tissue for Dmel\CCY

Bulk Downloads

RNA-Seq RPKM values for all genes

Reference

See Gelbart and Emmert, 2013 for analysis details and data files for all genes.

Developmental Proteome: Life Cycle

Developmental Proteome: Embryogenesis

External Data and Images

Linkouts

DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species

26067057/tissue=All

EMBL-EBI Single Cell Expression Atlas - Single cell expression across species

FBgn0267592

FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data

FBgn0267592

Images

FlyBase Wiki

Image Based Resources

Alleles, Insertions, Transgenic Constructs, and Aberrations

Classical and Insertion Alleles ( 19 )

For All Classical and Insertion Alleles Show

Other relevant insertions

Transgenic Constructs ( 1 )

For All Alleles Carried on Transgenic Constructs Show

Transgenic constructs containing/affecting coding region of CCY

Transgenic constructs containing regulatory region of CCY

Aberrations (Deficiencies and Duplications) ( 4 )

Inferred from experimentation ( 4 )

Gene not disrupted in

Df(YL)F11

(Hafezi et al., 2020)

Df(YL)F16

(Hafezi et al., 2020)

Df(YL)F52

(Hafezi et al., 2020)

Df(YL)F63

(Hafezi et al., 2020)

Inferred from location ( 0 )

Variants

Variant Molecular Consequences

Alleles Representing Disease-Implicated Variants

Phenotypes

For more details about a specific phenotype click on the relevant allele symbol.

Other Phenotypes

Allele

decreased fecundity, with Scer\GAL4^VP16.bam

CCY^HMJ23544

Phenotype manifest in

Allele

cystic bulge | absent, with Scer\GAL4^VP16.bam

CCY^HMJ23544

spermatozoon | absent, with Scer\GAL4^VP16.bam

CCY^HMJ23544

waste bag | absent, with Scer\GAL4^VP16.bam

CCY^HMJ23544

Orthologs

Downloads

Download All DIOPT Orthologs

Human Orthologs (via DIOPT v9.1)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Homo sapiens (Human) (4)

Hsap\COLEC10

1 of 14

Yes

Hsap\COLEC11

1 of 14

Yes

Hsap\NCAN

1 of 14

Yes

Hsap\VCAN

1 of 14

Yes

Model Organism Orthologs (via DIOPT v9.1)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Rattus norvegicus (Norway rat) (3)

Rnor\Klrb1a

1 of 14

Yes

Rnor\Klrb1b

1 of 14

Yes

Rnor\Vcan

1 of 14

Yes

Mus musculus (laboratory mouse) (4)

Mmus\Cd209c

1 of 14

Yes

Mmus\Clca3b

1 of 14

Yes

Mmus\Colec10

1 of 14

Yes

Mmus\Vcan

1 of 14

Yes

Xenopus tropicalis (Western clawed frog) (2)

Xtro\clec11a

1 of 13

Yes

Xtro\colec10

1 of 13

Yes

Danio rerio (Zebrafish) (14)

Drer\asgrl1

1 of 14

Yes

Drer\clec3bb

1 of 14

Yes

Drer\colec11

1 of 14

Yes

Drer\illr1

1 of 14

Yes

Drer\illr3

1 of 14

Yes

Drer\mrc1a

1 of 14

Yes

Drer\mrc1b

1 of 14

Yes

Drer\si:ch211-125e6.5

1 of 14

Yes

Drer\si:ch211-125e6.11

1 of 14

Yes

Drer\si:ch211-125e6.14

1 of 14

Yes

Drer\vcana

1 of 14

Yes

Drer\zgc:172053

1 of 14

Yes

Drer\zgc:174904

1 of 14

Yes

Drer\zmp:0000000937

1 of 14

Yes

Caenorhabditis elegans (Nematode, roundworm) (0)

Anopheles gambiae (African malaria mosquito) (9)

Agam\AgaP_AGAP007409

1 of 12

Yes

Agam\CTL5

1 of 12

Yes

Agam\CTL6

1 of 12

Yes

Agam\CTLMA1

1 of 12

Yes

Agam\CTLMA2

1 of 12

Yes

Agam\CTLMA4

1 of 12

Yes

Agam\CTLMA6

1 of 12

Yes

Agam\CTLMA7

1 of 12

Yes

Agam\CTLMA8

1 of 12

Yes

Arabidopsis thaliana (thale-cress) (0)

Saccharomyces cerevisiae (Brewer's yeast) (0)

Schizosaccharomyces pombe (Fission yeast) (0)

Escherichia coli (enterobacterium) (0)

Other Organism Orthologs (via OrthoDB)

Data provided directly from OrthoDB:CCY. Refer to their site for version information.

Paralogs

Downloads

Download All DIOPT Paralogs

Paralogs (via DIOPT v9.1)

Gene Symbol

Score

Source

Alignment

Drosophila melanogaster (Fruit fly) (14)

2 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

tfc

1 of 13

Human Disease Associations

FlyBase Human Disease Model Reports

Disease Ontology (DO) Annotations

Models Based on Experimental Evidence ( 0 )

Allele

Disease

Evidence

References

Potential Models Based on Orthology ( 0 )

Human Ortholog

Disease

Evidence

References

Modifiers Based on Experimental Evidence ( 0 )

Allele

Disease

Interaction

References

Disease Associations of Human Orthologs (via DIOPT v9.1 and OMIM)

Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.

Homo sapiens (Human)

Gene name

Score

OMIM

OMIM Phenotype

DO term

Complementation?

Transgene?

Functional Complementation Data

Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.

Interactions

Summary of Physical Interactions

esyN Network Diagram

Other Interaction Browsers

Summary of Genetic Interactions

esyN Network Diagram

Other Interaction Browsers

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

External Data

Linkouts

DroID - A comprehensive database of gene and protein interactions.

FBgn0267592

Pathways

Signaling Pathways (FlyBase)

Metabolic Pathways

External Data

Linkouts

Genomic Location and Detailed Mapping Data

Chromosome (arm)

Recombination map

Y-

Cytogenetic map

Sequence location

Y:3,649,996..3,666,928 [+]

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

Y-

(de Carvalho, 2001.10.4)

Left of (cM)

Right of (cM)

Notes

Stocks and Reagents

Stocks (2)

Aberrations including deletions of this gene Aberrations including duplications of this gene

Bloomington

61959

y¹ v¹; P{TRiP.HMJ23544}attP40

NIG-Fly

HMJ23544

y¹ v¹; P{TRiP.HMJ23544}attP40/CyO

Genomic Clones (0)

cDNA Clones (1)

Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see JBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA clones, fully sequenced

BDGP DGC clones

Other clones

Drosophila Genomics Resource Center cDNA clones

For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

FBgn0267592

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

RNAi and Array Information

Linkouts

Antibody Information

Laboratory Generated Antibodies

Commercially Available Antibodies

Cell Line Information

Publicly Available Cell Lines

Other Stable Cell Lines

Other Comments

Sequence of transcript(s) changed in r6 genomic release relative to r5 release.

(FlyBase Genome Annotators, 2014)

New annotation (CG42620) in release 5.21 of the genome annotation.

(FlyBase Genome Annotators, 2009)

New annotation (CG40968) in release 5.2 of the genome annotation.

(Drosophila Heterochromatin Genome Project, 2007)

New annotation (CG40948) in release 5.2 of the genome annotation.

(Drosophila Heterochromatin Genome Project, 2007)

Relationship to Other Genes

Source for database merge of

Source for merge of: Ccy NEST:bs20e03

(FlyBase, 1996-)

Source for merge of: CG40968 CG42620 CG40948

(FlyBase Genome Annotators, 2014)

Additional comments

Annotations CG40968, CG42620 and CG40948 merged as CG45930 in release 6.02 of the genome annotation. This gene is no longer fragmented in the release 6 genome assembly.

(FlyBase Genome Annotators, 2014)

Nomenclature History

Source for database identify of

Source for identity of: CCY Ccy

(FlyBase, 2009-)

Nomenclature comments

Gene symbol changed from 'Ccy' to 'CCY' to reflect the capitalization used in the original publication (FBrf0141717) and general usage since.

(FlyBase, 2009-)

Etymology

Synonyms and Secondary IDs (10)

Reported As

Symbol Synonym

CCY

(Chang et al., 2022, Kotov et al., 2022, Bartolo et al., 2021, Lawlor et al., 2021, Hafezi et al., 2020, Zhang et al., 2020, Hoskins et al., 2015, Singh et al., 2014, Koerich et al., 2008, Vibranovski et al., 2008, Koerich et al., 2007, Carvalho and Clark, 2005, de Carvalho et al., 2001, FlyBase, 1996-)

CG40948

(Drosophila Heterochromatin Genome Project, 2007)

CG40968

(Drosophila Heterochromatin Genome Project, 2007)

CG42620

(FlyBase Genome Annotators, 2014, FlyBase Genome Annotators, 2009)

CG45930

(FlyBase Genome Annotators, 2014, Perkins et al., 2009)

Ccy

(Lemos et al., 2008)

NEST:bs20e03

bs20e03.y1

(Oliver, 2001.8.16)

ccy

Name Synonyms

Coiled-Coils Y

(Garlovsky et al., 2022, Hoskins et al., 2015, de Carvalho et al., 2001)

Secondary FlyBase IDs

FBgn0045229
FBgn0046337
FBgn0085546
FBan0040968
FBgn0261335
FBgn0085541
FBan0040948

Datasets (0)

Study focus (0)

Experimental Role

Project

Project Type

Title

Study result (0)

Result

Result Type

Title

External Crossreferences and Linkouts ( 25 )

Sequence Crossreferences

NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.

26067057

GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.

GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.

RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.

UniProt/GCRP - The gene-centric reference proteome (GCRP) provides a 1:1 mapping between genes and UniProt accessions in which a single 'canonical' isoform represents the product(s) of each protein-coding gene.

A0A0S0X8W1

UniProt/TrEMBL - Automatically annotated and unreviewed records of protein sequence and functional information

Other crossreferences

AlphaFold DB - AlphaFold provides open access to protein structure predictions for the human proteome and other key proteins of interest, to accelerate scientific research.

A0A0S0X8W1

DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species

26067057/tissue=All

EMBL-EBI Single Cell Expression Atlas - Single cell expression across species

FBgn0267592

FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data

FBgn0267592

KEGG Genes - Molecular building blocks of life in the genomic space.

dme:Dmel_CG45930

MARRVEL_MODEL - MARRVEL (model organism gene)

26067057

Linkouts

Drosophila Genomics Resource Center - Drosophila Genomics Resource Center (DGRC) cDNA clones

FBgn0267592

DroID - A comprehensive database of gene and protein interactions.

FBgn0267592

FlyCyc Genes - Genes from a BioCyc PGDB for Dmel

FBGN0267592

References (29)

The following external sites may use different assemblies or annotations than FlyBase.

3.17

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