FB2024_03 , released June 25, 2024
FB2024_03 , released June 25, 2024
CV Term Report
Help Close All Open All
General Information
Term start_lost ID (Ontology) SO:0002012 (Sequence Ontology)
Definition A codon variant that changes at least one base of the canonical start codon.
Also Known As "Jannovar:start_lost" ; "snpEff:START_LOST" ; "VEP:start_lost"
Comment
Links to Extrernal Ontologies
SO.org
Annotations
Records annotated with this term OR any of its CHILD TERMS
    Results list data from multiple species. Click on a button above and use the 'Filter by species' options on the resulting HitList to retrieve species-specific data.
Records annotated with this exact term (annotations to child terms are NOT included)
No relevant records available
show Full annotation statements including this term (annotations to child terms are NOT included), and relevant FlyBase records
 Full annotation statements 
Relevant FlyBase reports
 Alleles
 start_lost (all annotations which use CV term, excluding "NOT" statements)      23
Spanning Tree (Parents/Children)
Only view relationship: 
coding_sequence_variant
 |__initiator_codon_variant__
inframe_variant              |
 |__nonsynonymous_variant____|
                             start_lost  23 rec.
Spanning Tree View Settings
Parents/Children
View Depth
Show hierarchy levels: for parents, for children
hide Relationships
Is a initiator_codon_variant
nonsynonymous_variant
Part of
hide Synonyms & Secondary IDs
Synonyms
  • "Jannovar:start_lost" EXACT VAR
    "snpEff:START_LOST" EXACT VAR
    "VEP:start_lost" EXACT VAR
Secondary IDs
hide External Crossreferences & Linkouts
http://snpeff.sourceforge.net/SnpEff_manual.html
http:www.ensembl.org/info/genome/variation/predicted_data.html#consequences