modification-dependent macromolecule catabolic process__
proteolysis involved in protein catabolic process_______|
                                                        modification-dependent protein catabolic process
                                                         |__ubiquitin-dependent protein catabolic process  336 rec.
                                                             |__proteasome-mediated ubiquitin-dependent protein catabolic process 250 rec.
                                                             |   |__anaphase-promoting complex-dependent catabolic process(+) 19 rec.
                                                             |   |__cytoplasm protein quality control by the ubiquitin-proteasome system
                                                             |   |__mitochondria-associated ubiquitin-dependent protein catabolic process
                                                             |   |__negative regulation of transcription by transcription factor catabolism
                                                             |   |__nuclear protein quality control by the ubiquitin-proteasome system(+) 1 rec.
                                                             |   |__regulation of proteasomal ubiquitin-dependent protein catabolic process(+) 57 rec.
                                                             |   |__ribosome-associated ubiquitin-dependent protein catabolic process(+) 2 rec.
                                                             |   |__SCF-dependent proteasomal ubiquitin-dependent protein catabolic process(+) 66 rec.
                                                             |   |__stress-induced homeostatically regulated protein degradation pathway
                                                             |   |__ubiquitin-dependent protein catabolic process via the C-end degron rule pathway
                                                             |   |__ubiquitin-dependent protein catabolic process via the N-end rule pathway 4 rec.
                                                             |__protein arginylation 1 rec.
                                                             |__protein deubiquitination involved in ubiquitin-dependent protein catabolic process 1 rec.
                                                             |__regulation of multivesicular body size involved in ubiquitin-dependent protein catabolism
                                                             |__regulation of ubiquitin-dependent protein catabolic process 70 rec.
                                                             |   |__negative regulation of ubiquitin-dependent protein catabolic process(+) 14 rec.
                                                             |   |__positive regulation of ubiquitin-dependent protein catabolic process(+) 52 rec.
                                                             |   |__regulation of proteasomal ubiquitin-dependent protein catabolic process(+) 57 rec.
                                                             |__ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway 14 rec.
                                                                 |__protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway 6 rec.