FlyBase Natural Transposon Report: Dmel\McClintock

General Information

Symbol

McClintock

Species

D. melanogaster

Feature type

natural_transposable_element

FlyBase ID

FBte0000926

Sequences and Components

Complete element (bp)

6450

(Kaminker et al., 2002)

Terminal repeat (bp)

Reference sequence

transposon_sequence_set.embl.txt.gz

Component genes

McClintock\pol

McClintock\gag

Sequence Accessions

GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.

AF541948

Sequence Ontology (SO)

Transposon type

LTR_retrotransposon

(Mugnier et al., 2008, Lipatov et al., 2005, Kaminker, 2002.8.29, Kaminker et al., 2002)

transposable_element

(Mugnier et al., 2008, Kaminker et al., 2002)

Insertions and Copy Number

Copy number and comments

2 in euchromatin of Release 3 genome annotation, both full length.

(Kaminker et al., 2002)

Search for

Target Site Duplication

Size (bp)

Orthologs

Curated drosophilid orthologs

Comments

Other Information

Etymology

External Crossreferences and Linkouts ( 1 )

Crossreferences

GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.

AF541948

Synonyms and Secondary IDs (4)

Reported As

Symbol Synonym

McC

(Zhang et al., 2011)

McClintock

(Wierzbicki et al., 2023, Nefedova and Kim, 2017, Kofler et al., 2015, Senti et al., 2015, Wang et al., 2015, Czech et al., 2013, Kofler et al., 2012, Nefedova et al., 2011, Pane et al., 2011, Petrov et al., 2011, Lu and Clark, 2010, Deloger et al., 2009, Li et al., 2009, Kawamura et al., 2008, Brennecke et al., 2007, Lipatov et al., 2005, FlyBase, 1992-)

Mcclintock

(Mugnier et al., 2008)

mclintock

(Anand and Kai, 2012)

Secondary FlyBase IDs

FBgn0063917
FBtp0017043

References (27)

Report Sections

Open Close