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FB2024_04
,
released June 25, 2024
Tools
Tools Overview & Help
Query by symbols/IDs
Batch Download
Sequence Downloader
ID Validator
Feature Mapper
Search/Browse Portals
QuickSearch
Vocabularies
QueryBuilder
CytoSearch
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BLAST
JBrowse
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modENCODE RNA-Seq
Overview
RNA-Seq Similarity
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RNA-Seq By Region
JBrowse
Submit Data
Fast-Track Your Paper
Submit Personal Communication
Feedback on Gene Snapshots
Downloads
Overview
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Map Conversion
FTP Site:
Releases (FTP)
Genomes (FTP)
Links
External Resources
Model Organisms (MODs)
Alliance of Genome Resources
BeeBase
DictyBase
EcoCyc
Gramene
MGI
PomBase
Pseudobase
RGD
SGD
TAIR
VectorBase
WormBase
Xenbase
ZFIN
Stock Collections
Bloomington Drosophila Stock Center (BDSC)
FlyORF
Korea Drosophila Resource Center (KDRC)
Kyoto Stock Center
NIG-FLY
Tsinghua Fly Center (THFC)
Vienna Drosophila Resource Center (VDRC)
BDGP
DGRC
DRSC/TRiP
DIS by issue
FlyBook
FlyExpress
Interactive Fly
Virtual Fly Brain
FlyCyc
Community
Fast-Track Your Paper
FlyBase Community
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X (formerly Twitter)
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Nontraditional alleles
Vectors & Constructs
New to Flies?
Video Tutorials
FlyBase For Developers
New Split-GAL4 report pages on FlyBase
Transgenic product class in Gene Reports
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Previous
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FB2024_04
,
released June 25, 2024
Natural Transposon: Dmel\rooA
J2G
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General Information
Symbol
rooA
Species
D. melanogaster
Feature type
natural_transposable_element
FlyBase ID
FBte0000765
Sequences and Components
Complete element (bp)
7621
(
Kaminker et al., 2002
)
Terminal repeat (bp)
Reference sequence
transposon_sequence_set.embl.txt.gz
Component genes
Sequence Accessions
Sequence Ontology (SO)
Transposon type
LTR_retrotransposon
(
Kaminker et al., 2002
,
Kapitonov and Jurka, 1997-
)
transposable_element
(
Kaminker et al., 2002
,
Kapitonov and Jurka, 1997-
)
Insertions and Copy Number
Copy number and comments
5 in euchromatin of Release 3 genome annotation, of which zero are full length.
(
Kaminker et al., 2002
)
Search for
All insertions of this transposon
Insertions in the sequenced strain
Insertions in other strains
Target Site Duplication
Size (bp)
13
(
Linheiro and Bergman, 2012
)
Orthologs
Curated drosophilid orthologs
Comments
Other Information
Etymology
External Crossreferences and Linkouts ( 0 )
Synonyms and Secondary IDs (4)
Reported As
Symbol Synonym
ROOA
(
Olivieri et al., 2012
,
Kapitonov and Jurka, 1997-
)
ROO_A
(
Saint-Leandre et al., 2020
)
RooA
(
Kapitonov and Jurka, 2003
)
rooA
(
Wierzbicki et al., 2023
,
Huang et al., 2021
,
Kofler et al., 2015
,
Senti et al., 2015
,
Sytnikova et al., 2014
,
Czech et al., 2013
,
Ohtani et al., 2013
,
Kofler et al., 2012
,
Linheiro and Bergman, 2012
,
Pane et al., 2011
,
de la Chaux and Wagner, 2009
,
Deloger et al., 2009
,
Li et al., 2009
,
Malone et al., 2009
,
Brennecke et al., 2008
,
Kawamura et al., 2008
,
Brennecke et al., 2007
,
Bergman et al., 2006
,
Ganko et al., 2006
,
FlyBase, 1992-
)
Secondary FlyBase IDs
FBgn0063394
FBtp0017074
References (31)
Report Sections
Open
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General Information
Sequences and Components
Sequence Ontology
Insertions
Orthologs
Comments
Other Information
Crossreferences
Synonyms and Secondary IDs
References