FB2024_04 , released June 25, 2024
Natural Transposon: Dmel\Burdock
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General Information
Symbol
Burdock
Species
D. melanogaster
Feature type
natural_transposable_element
FlyBase ID
FBte0000739
Sequences and Components
Complete element (bp)

6411

Terminal repeat (bp)

277

Reference sequence
transposon_sequence_set.embl.txt.gz
Component genes
Burdock\pol
Burdock\gag
Sequence Accessions
GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.
Sequence Ontology (SO)
Insertions and Copy Number
Copy number and comments

6411 in euchromatin of Release 3 genome annotation, of which 13 are full length.

(Kaminker et al., 2002)
Search for
Target Site Duplication
Size (bp)

4 (TATA in the case of the insertions into the ct hotspot)

12

(Krasnov et al., 1999)

4

(Linheiro and Bergman, 2012)
Orthologs
Curated drosophilid orthologs
Dsim\Burdock
(Vieira et al., 1999)
Comments

YNNUTUTUYAYA (Y = pyrimidine, U = purine).

(Krasnov et al., 1999)

A Burdock insertion in the ct locus (ctMR21K1) is sequenced. The element is found to be a short retrotransposon with long terminal repeats and a single open reading frame.

(Ponomarenko et al., 1997)

Nucleotide position -123 of the ct locus is a hotspot for Burdock element insertions.

(Tchurikov et al., 1989)
Other Information
Etymology
External Crossreferences and Linkouts ( 5 )
Crossreferences
GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.
Synonyms and Secondary IDs (6)
Reported As
Symbol Synonym
BURDOCK
(Ninova et al., 2020, Satyaki et al., 2014, Le Thomas et al., 2013, Olivieri et al., 2012, Zhou et al., 2009)
Burdock
(Nguyen et al., 2023, Wierzbicki et al., 2023, Rigal et al., 2022, Wang et al., 2022, de Oliveira et al., 2021, Huang et al., 2021, Dou et al., 2020, Lepesant et al., 2020, Duc et al., 2019, Rech et al., 2019, Zhao et al., 2019, Sun et al., 2018, Théron et al., 2018, Karam et al., 2017, Nefedova and Kim, 2017, Rashpa et al., 2017, Teixeira et al., 2017, Chen et al., 2016, Wylie et al., 2016, Kofler et al., 2015, Senti et al., 2015, Wang et al., 2015, Hayashi et al., 2014, Dönertas et al., 2013, Handler et al., 2013, Kofler et al., 2012, Linheiro and Bergman, 2012, Rincon-Arano et al., 2012, Sienski et al., 2012, Nefedova et al., 2011, Pane et al., 2011, Petrov et al., 2011, Wang and Elgin, 2011, Yin et al., 2011, Zhang et al., 2011, Lu and Clark, 2010, Makunin and Yurlova, 2010, Makunin and Yurlova, 2010, Deloger et al., 2009, Hamilton et al., 2009, Henikoff et al., 2009, Li et al., 2009, Kawamura et al., 2008, Bergman and Bensasson, 2007, Brennecke et al., 2007, Nefedova and Kim, 2007, Smith et al., 2007, Bergman et al., 2006, Lipatov et al., 2005, Dimitri et al., 2003)
Burdock element
EG:BACR7C10.5
(Benos, 2000.2.6, Benos, 2000.12.13)
HDC14603
burdock
(Eastwood et al., 2021, Fabry et al., 2021, Schnabl et al., 2021, Batki et al., 2019, Kneuss et al., 2019, Huang et al., 2014, Czech et al., 2013, Ohtani et al., 2013, Malone et al., 2009, Brennecke et al., 2008, Mugnier et al., 2008, Terzian et al., 2001, Biemont and Cizeron, 1999, Whalen and Grigliatti, 1998, Ponomarenko et al., 1997, Tchurikov et al., 1989)
Secondary FlyBase IDs
  • FBgn0010302
  • FBtp0011417
References (96)