FB2024_04 , released June 25, 2024
Natural Transposon: Dmel\hopper
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General Information
Symbol
hopper
Species
D. melanogaster
Feature type
natural_transposable_element
FlyBase ID
FBte0000670
Sequences and Components
Complete element (bp)

1435

(Kapitonov and Jurka, 2003, Kaminker et al., 2002)
Terminal repeat (bp)

33

(Kapitonov and Jurka, 2003)
Reference sequence
transposon_sequence_set.embl.txt.gz
Component genes
Sequence Accessions
GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.
Sequence Ontology (SO)
Insertions and Copy Number
Copy number and comments

20-30

(Bernstein, 1994.6.30)

15 in euchromatin of Release 3 genome annotation, of which 11 are full length.

(Kaminker et al., 2002)
Search for
Target Site Duplication
Size (bp)

5

(Linheiro and Bergman, 2012, Bernstein, 1994.6.30)
Orthologs
Curated drosophilid orthologs
Dsim\hopper
Comments

The hopper element, defined as the insertion in SxlM4 is 1,435bp long, has 33bp inverted repeats and generates 5bp target site duplication upon insertion. The element is present at around 20-30 copies per genome.

(Bernstein et al., 1995)

Not the same as Dsim\hopper.

(Bernstein, 1994.6.30)
Other Information
Etymology
External Crossreferences and Linkouts ( 1 )
Crossreferences
GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.
Synonyms and Secondary IDs (6)
References (46)