FlyBase Natural Transposon Report: Dmel\antonia

General Information

Symbol

antonia

Species

D. melanogaster

Feature type

natural_transposable_element

FlyBase ID

FBte0000640

Sequences and Components

Complete element (bp)

7387

(Kaminker et al., 2002)

Terminal repeat (bp)

Reference sequence

transposon_sequence_set.embl.txt.gz

Component genes

Quasimodo\pol

Quasimodo\gag

Quasimodo\env

Sequence Accessions

GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.

Sequence Ontology (SO)

Transposon type

LTR_retrotransposon

(Mugnier et al., 2008, Dimitri et al., 2003, Kaminker et al., 2002, McCollum et al., 2002)

transposable_element

(Mugnier et al., 2008, Kaminker et al., 2002)

Insertions and Copy Number

Copy number and comments

14 in euchromatin of Release 3 genome annotation, of which 5 are full length.

(Kaminker et al., 2002)

Search for

Target Site Duplication

Size (bp)

(Linheiro and Bergman, 2012)

Orthologs

Curated drosophilid orthologs

Dmau\antonia

Comments

Expression is enriched in embryonic gonads.

(Shigenobu et al., 2006)

Renamed from 'Quasimodo' to 'antonia' to reflect the name used in the first published paper on this transposon (FBrf01384230), and to disambiguate it from the gene with the same name (FBgn0028622).

(FlyBase, 1992-)

Other Information

Etymology

External Crossreferences and Linkouts ( 8 )

Crossreferences

GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.

Synonyms and Secondary IDs (9)

Reported As

Symbol Synonym

Antonia

(Ganko, 2002.2.21, McCollum et al., 2002)

Cruiser

(Rizzon et al., 2002, Tulin et al., 2002)

QUASIMODO

(Rigal et al., 2022, Satyaki et al., 2014)

QUASIMODO2

(Lawlor et al., 2021)

QUASIMODO_I

(Gunawardane et al., 2007, Quesneville et al., 2003)

antonia

(Bowen and McDonald, 2001)

cruiser

(Gunawardane et al., 2007, Saito et al., 2006, Celniker et al., 2002, Kronmiller, 2001.3.27)

quasimodo

(Patil et al., 2014, Czech et al., 2013, Ohtani et al., 2013, Malone et al., 2009, Brennecke et al., 2008, Mugnier et al., 2008)

Secondary FlyBase IDs

FBgn0044355
FBgn0062261
FBtp0017044

References (63)

Report Sections

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