FB2024_04 , released June 25, 2024
Natural Transposon: Dmel\Rt1b
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General Information
Symbol
Rt1b
Species
D. melanogaster
Feature type
natural_transposable_element
FlyBase ID
FBte0000603
Sequences and Components
Complete element (bp)

5171

(Busseau, 2000.10.18)

5183

(Kaminker et al., 2002)
Terminal repeat (bp)
Reference sequence
transposon_sequence_set.embl.txt.gz
Component genes
Rt1b\gag
Rt1b\RTase
Sequence Accessions
GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.
Sequence Ontology (SO)
Insertions and Copy Number
Copy number and comments

37 in euchromatin of Release 3 genome annotation, of which 5 are full length.

(Kaminker et al., 2002)
Search for
Target Site Duplication
Size (bp)
Orthologs
Curated drosophilid orthologs
Comments

Rt1b elements are often inserted within or very close to (CA)n arrays.

(Busseau et al., 2001)
Other Information
Etymology
External Crossreferences and Linkouts ( 10 )
Crossreferences
GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.
Synonyms and Secondary IDs (15)
Reported As
Symbol Synonym
CG12574
CG12614
(Misra, 2001.8.16)
CG15039
(Misra, 2001.7.31)
CG18225
(Misra, 2001.8.16)
CG3549
(Han et al., 2003, Stempfl et al., 2002, Misra, 2001.7.31)
DMRT1B
(Chang et al., 2019, Gunawardane et al., 2007, Kapitonov and Jurka, 2003)
RT1B
(Rigal et al., 2022, Saint-Leandre et al., 2020, Théron et al., 2018, Satyaki et al., 2014, Sytnikova et al., 2014, Ohtani et al., 2013, Malone et al., 2009, Brennecke et al., 2008)
Rt1
(Miyao and Yamanouchi, 2022, Petrov et al., 2011)
Rt1B
(Czech et al., 2013)
Rt1b
(Wierzbicki et al., 2023, Huang et al., 2021, Rech et al., 2019, Villanueva-Cañas et al., 2019, Karam et al., 2017, Kofler et al., 2015, Molla-Herman et al., 2015, Senti et al., 2015, Huang et al., 2014, Muerdter et al., 2013, Vagin et al., 2013, Anand and Kai, 2012, Kofler et al., 2012, Sienski et al., 2012, Handler et al., 2011, Pane et al., 2011, González et al., 2010, Deloger et al., 2009, Hamilton et al., 2009, Li et al., 2009, Ghildiyal et al., 2008, González et al., 2008, Kawamura et al., 2008, Weber et al., 2008, Brennecke et al., 2007, Smith et al., 2007, Bergman et al., 2006, FlyBase, 1992-)
Rt1b{}
(Gou et al., 2010)
Rtb1
(Mugnier et al., 2008)
Waldo-A
(Blumenstiel et al., 2002, Berezikov et al., 2001, Busseau et al., 2001, Misra, 2001.7.30, Misra, 2001.7.31, Misra, 2001.7.31, Misra, 2001.7.31, Misra, 2001.8.16, Misra, 2001.8.16, Misra, 2001.8.16, Berezikov et al., 2000, Busseau, 2000.10.18)
WaldoA
(Rizzon et al., 2002)
rt1B
(Patil et al., 2014)
Secondary FlyBase IDs
  • FBgn0040015
  • FBgn0039981
  • FBgn0033011
  • FBgn0032954
  • FBgn0030957
  • FBgn0042682
  • FBtp0017046
References (70)