FlyBase Natural Transposon Report: Dmel\Stalker2

General Information

Symbol

Stalker2

Species

D. melanogaster

Feature type

natural_transposable_element

FlyBase ID

FBte0000472

Sequences and Components

Complete element (bp)

7660

(Salles et al., 2002)

8119

(Kaminker et al., 2002)

Terminal repeat (bp)

Reference sequence

transposon_sequence_set.embl.txt.gz

Component genes

Stalker2\ORF4

(Salles et al., 2002)

Stalker2\ORF3

(Salles et al., 2002)

Stalker2\ORF2

(Salles et al., 2002)

Stalker2\ORF1

(Salles et al., 2002)

Sequence Accessions

GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.

Sequence Ontology (SO)

Transposon type

LTR_retrotransposon

(Lipatov et al., 2005, Kaminker et al., 2002, Salles et al., 2002, Kapitonov and Jurka, 1997-)

transposable_element

(Lerat et al., 2003, Kaminker et al., 2002, Salles et al., 2002, Kapitonov and Jurka, 1997-)

Insertions and Copy Number

Copy number and comments

13 in euchromatin of Release 3 genome annotation, of which 4 are full length.

(Kaminker et al., 2002)

Search for

Target Site Duplication

Size (bp)

(Salles et al., 2002)

(Linheiro and Bergman, 2012)

Orthologs

Curated drosophilid orthologs

Dsim\Stalker2

(Sanchez-Gracia et al., 2005)

Comments

Expression is enriched in embryonic gonads.

(Shigenobu et al., 2006)

Stalker2 shares extensive sequence similarity with the 412 element. Stalker2 contains four predicted open reading frames.

(Salles et al., 2002)

Other Information

Etymology

Etymology: element is named "romano" owing to its mobility.

(Salles et al., 2002)

External Crossreferences and Linkouts ( 6 )

Crossreferences

GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.

Synonyms and Secondary IDs (13)

Reported As

Symbol Synonym

BcDNA:SD04061

(BDGP Project Members, 2000-)

HDC10856

New-Stalker

(Sanchez-Gracia et al., 2005)

STALKER2

(Rigal et al., 2022, Satyaki et al., 2014)

Stalker 2

(Klattenhoff et al., 2009, Kawamura et al., 2008)

anon-EST:fe1A12

anon-fast-evolving-1A12

new-Stalker

new-stalker

(Lerat et al., 2003)

rom

(Salles et al., 2002)

romano

(Salles et al., 2002)

stalker2

(Théron et al., 2018, Patil et al., 2014, Czech et al., 2013, Ohtani et al., 2013, Anand and Kai, 2012, Malone et al., 2009, Brennecke et al., 2008, Czech et al., 2008, Shigenobu et al., 2006)

Secondary FlyBase IDs

FBgn0067674
FBgn0063455
FBgn0046762
FBgn0025278
FBgn0063399
FBtp0017049

References (56)

Report Sections

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