FlyBase Natural Transposon Report: Dmel\Cr1a

General Information

Symbol

Cr1a

Species

D. melanogaster

Feature type

natural_transposable_element

FlyBase ID

FBte0000140

Sequences and Components

Complete element (bp)

4470

(Kaminker et al., 2002)

Terminal repeat (bp)

Reference sequence

transposon_sequence_set.embl.txt.gz

Component genes

Sequence Accessions

GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.

AJ781055

Sequence Ontology (SO)

Transposon type

non_LTR_retrotransposon

(Mugnier et al., 2008, Dimitri et al., 2003, Kaminker et al., 2002, Kapitonov and Jurka, 1997-)

transposable_element

(Mugnier et al., 2008, Kaminker et al., 2002, Kapitonov and Jurka, 1997-)

Insertions and Copy Number

Copy number and comments

56 in euchromatin of Release 3 genome annotation, of which 1 is full length.

(Kaminker et al., 2002)

Search for

Target Site Duplication

Size (bp)

Orthologs

Curated drosophilid orthologs

Comments

Other Information

Etymology

External Crossreferences and Linkouts ( 1 )

Crossreferences

GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.

AJ781055

Synonyms and Secondary IDs (7)

Reported As

Symbol Synonym

CR1

(Ortiz et al., 2015, Satyaki et al., 2014, Rho and Tang, 2009)

CR1A

(Rigal et al., 2022, Saint-Leandre et al., 2020, Ohtani et al., 2013, Malone et al., 2009, Brennecke et al., 2008)

Cr1

(Mérel et al., 2020)

DM-CR1A

(Lau et al., 2009)

DMCR1A

(Olivieri et al., 2012, Zhou et al., 2009, Gunawardane et al., 2007, Kapitonov and Jurka, 2003, Kapitonov and Jurka, 1997-)

cra1

(Mugnier et al., 2008)

Secondary FlyBase IDs

FBgn0063594
FBtp0017032

References (48)

Report Sections

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