FB2024_04 , released June 25, 2024
Natural Transposon: Dmel\diver
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General Information
Symbol
diver
Species
D. melanogaster
Feature type
natural_transposable_element
FlyBase ID
FBte0000001
Sequences and Components
Complete element (bp)

6112

(Kaminker et al., 2002, Frame et al., 2001)
Terminal repeat (bp)
Reference sequence
transposon_sequence_set.embl.txt.gz
Component genes
Sequence Accessions
GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.
Sequence Ontology (SO)
Insertions and Copy Number
Copy number and comments

7

(Frame et al., 2001)

9 in euchromatin of Release 3 genome annotation, of which all are full length.

(Kaminker et al., 2002)
Search for
Target Site Duplication
Size (bp)
Orthologs
Curated drosophilid orthologs
Comments

The diver element in AC004377 (P1 clone DS00837) has LTRs of 245 and 224bp matching exactly over the shorter length. It has one long open reading frame of 5224bp showing recognisable motifs corresponding to gag, protease, reverse transcriptase, RNase H and integrase. The protease and RNase H active sites are unusual (D-Q-G instead of D-S/T-G in the protease and D-G-S instead of the more usual D-A-S in RNase H).

(Frame et al., 2001)
Other Information
Etymology

Etymology: element is named "Nuria" after the author's daughter "who is in constant motion".

(Mathog, 2001.2.2)
External Crossreferences and Linkouts ( 6 )
Crossreferences
GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.
Synonyms and Secondary IDs (11)
Reported As
Symbol Synonym
BcDNA:SD07683
DIVER
(Ninova et al., 2020, Saint-Leandre et al., 2020, Satyaki et al., 2014, Le Thomas et al., 2013, Olivieri et al., 2012, Zhou et al., 2009, Czech et al., 2008)
DIVER_I
(Gunawardane et al., 2007)
Diver
(Miyao and Yamanouchi, 2022, Rigal et al., 2022, Parhad et al., 2020, Zhang et al., 2018, Peng et al., 2016, Wang et al., 2016, Zhang et al., 2015, Darricarrère et al., 2013, Wang and Elgin, 2011, Zhang and Pugh, 2011, Hamilton et al., 2009, Kapitonov and Jurka, 2003, Bowen and McDonald, 2001)
HDC11981
Nuria
(Mathog, 2001.2.2, Mathog, 2001.5.23)
Tinker
(Rizzon et al., 2002, Butler, 2001.4.30, Mathog, 2001.5.23)
diveer
(de Oliveira et al., 2021)
diver
(Wierzbicki et al., 2023, Han et al., 2022, Gebert et al., 2021, Théron et al., 2018, Karam et al., 2017, Nefedova and Kim, 2017, Ku et al., 2016, Kofler et al., 2015, Molla-Herman et al., 2015, Senti et al., 2015, Czech et al., 2013, Darricarrère et al., 2013, Muerdter et al., 2013, Reinhardt and Jones, 2013, Kofler et al., 2012, Sienski et al., 2012, Liu et al., 2011, Nefedova et al., 2011, Pane et al., 2011, Petrov et al., 2011, Deloger et al., 2009, Li et al., 2009, Malone et al., 2009, Brennecke et al., 2008, Chung et al., 2008, Kawamura et al., 2008, Mugnier et al., 2008, Bergman and Bensasson, 2007, Brennecke et al., 2007, Ganko et al., 2006, FlyBase, 1992-)
mazi
(Bowen and McDonald, 2001)
tinker
(Mirkovic-Hösle and Förstemann, 2014, Lerat et al., 2003)
Secondary FlyBase IDs
  • FBgn0046988
  • FBgn0044421
  • FBgn0043969
  • FBtp0017055
References (68)