FB2024_03 , released April 23, 2024
Physical Interaction report
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General Information
Interaction Type
Interacting Genes
FlyBase ID
FBig0000104183
Interaction Network
Interactions Browser links
mir-ban network
hid network
esyN Network Diagram
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Protein
RNA
Selected Interactor(s)
Common Interactor(s)
Reported Interactions
FBrf0158764-1.miR-mRNA.GFP
Description
physical association
Collection
Cell line used
Participants
Corresponds to
Reported as
Role
Note

bantam

bait
hid 

W

prey
hid 
hid 
hid 
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
hid 
3-prime UTR
sufficient binding region
hid 
ban target site 1
necessary binding region
CAUCAUAUUCAAAUUGGUCUCAC
hid 
ban target site 4
necessary binding region
UAGUUUUCACAAUGAUCUCGG
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Overexpression of ban reduces the expression of a GFP reporter fused to the hid 3\'UTR. This repression is lost upon mutation of ban target sites.

GFP reporter assay

FBrf0158764-2.miR-mRNA.IHC
Description
physical association
Collection
Cell line used
Participants
Corresponds to
Reported as
Role
Note

bantam

bait
hid 

Hid

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was third instar larval wing discs; bait produced from transgenic construct; prey produced from transgenic construct.

ban represses hid at the level of translation; when the two are co-expressed, ban reduces hid protein levels but does not affect hid mRNA levels.

FBrf0187230-40.miR-mRNA.GFP
Description
physical association
Collection
Cell line used
Participants
Corresponds to
Reported as
Role
Note

ban

bait
hid 

hid

prey
hid 
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
hid 
3-prime UTR
sufficient binding region
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

In vitro synthesized miRNAs were injected into embryos before cellularization, and effects on the reporter were assessed at 10 hr AEL.

GFP reporter assay.

Positive control.

2\'O-methyl oligoribonucleotides antisense to ban leads to derepression of the hid GFP reporter.

Source was embryos of transgenic fly line; bait synthesized in vitro; prey produced from transgenic reporter construct.

FBrf0191474-7.miR-mRNA.LUC
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

Bantam

bait
hid 

W

prey
hid 
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
hid 
3-prime UTR
sufficient binding region
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was S2 cell line; bait produced from transfected construct; prey produced from transfected reporter construct.

Luciferase reporter assay.

FBrf0216115-3.miR-mRNA.LUC
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

bantam

bait
hid 

hid

prey
hid 
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
hid 
3-prime UTR
sufficient binding region
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was S2 cell line; bait produced from transfected construct; prey produced from transfected reporter construct.

Luciferase reporter assay.

Positive control.

FBrf0229403-1.miR-mRNA.LUC
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

bantam

bait
hid 

hid

prey
hid 
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
hid 
3-prime UTR
sufficient binding region
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Positive control.

luciferase reporter assay

Source was S2 cell line; bait produced from transfected construct; prey produced from transfected reporter construct.

External Crossreferences and Linkouts ( 1 )
Linkouts
MIST - An integrated Molecular Interaction Database
References (5)